Tpre001937.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:263779-266452[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0016 0.12 11.9 2.3 13 44 219 247 208 247 0.89 2 14 0.018 1.4 8.5 1.0 19 44 253 275 251 275 0.91 3 14 1.6 1.2e+02 2.3 0.7 19 43 281 302 278 307 0.75 4 14 0.0016 0.12 11.9 1.4 14 44 304 331 293 331 0.88 5 14 0.00036 0.027 14.0 0.4 18 44 336 359 333 359 0.92 6 14 0.006 0.44 10.1 1.7 19 44 365 387 363 387 0.92 7 14 0.2 15 5.2 0.9 18 29 392 403 390 418 0.73 8 14 0.023 1.7 8.2 1.1 18 43 420 442 409 443 0.82 9 14 0.054 4 7.0 1.5 19 44 449 471 446 471 0.93 10 14 0.0009 0.067 12.7 0.7 19 44 477 499 474 499 0.94 11 14 5.8 4.3e+02 0.5 1.1 19 44 505 527 503 527 0.86 12 14 0.13 9.5 5.8 0.5 19 44 533 555 531 555 0.95 13 14 0.0009 0.067 12.7 1.3 19 43 561 582 556 583 0.93 14 14 0.26 19 4.8 1.8 16 44 586 611 581 611 0.85
Sequence Information
- Coding Sequence
- ATgaggcacgcgcgcggcgTTCTGCTTCTCGTGTGCAAATTATCTATACCTGTGcgtgcgtacacacacatatacgagAGGAAAATAAGAGAAGTTAGTGAGATAAAAAGGGGGTGGATTCGACTTATGTATCATCGAGAGGACTTTTTCGTACGAAAGATTACTCGTCATCGTAGATCTGTCAGTAAGATGAGTAAGATGGAATCCAGTGGTCTCTTCAACTGTGCCATCagGGTGAAAGACGAACCCTGTGATACGTCTCTTATTGAGAATGATGACAATAGGATCGATGAGGCGCCTGATGTTAAAAATTTCCGATTCTCCAGAGAATATTCAACGTTTCAAGAAAGTGacaaaaatcacgaaaatGAATATGACGAAATGCAAATTTTGATTGAGTGCAAAGACGTCAAGCTTATTATGAATTCAttagaaaataagaaaactgACGATTATTCACCAAAATACTTGCGGAATATGAAGTATAGCGACGACGAAACTCaaaatgcaattaaaatagaaactcTGGATGGAGTCCAAAAGGAAATGGATTTAAATTTCGATTGTAAATTTACCGAGCATAATGAAAAGAGAAGTGATCAAAAGGATTTCAACGATAAACATCAACTCAAAACAAACATCGATTCTGTGCACACGGGTACCAAAAATACATGCGATACATGCAGAAAGACGTTCAAAAGGAAGGGCGATCTGAAGAGGCATGTTCAATCAGTTCATAATGGTGTCCCTCACTCATGTActatttgtggaaagacataTAAATGGAAGGGTGATTTGACGAGGCACGTTCAATCAgcgcataatggtgtcacctactcatgtgatatttgcggaaaattgtttcaatataaaattagtCTTAAAggccacatcgattcagtgcacAATGGGACCAAACATGCATGTGACGTTTGcggcaagaaattttcatttaaaagtaatcTCCAAgcccacatcgattcgatgcataatggtgtcaaacaatcatgtgatatttgtggcaAGACTTTAACAAGGAAGAATGATTTGACAAGGCACGTTCAATCAGTTCATAATGGTGTCACTCACTCATGTGCTATTTGTGGAAAGACGTATAAAAGTAAGGATAGTTTGACAAAGCACGTTCAATCAGCGCATAATGGTGTCAACTActcatgtaatatatgcggaaagtcatttacTCAGAAAGTTAGTCTCCAAATCCACATTAAATCAATACACAATAGTATCACCTactcatgtgatatttgcggcaaGACGCTTAAAAGAAAggatgatttaaaaattcacgttcaatcagtgcataatggtgtcacctactcatgtgatatttgcggaaaatcGTTTCCACATAAAACTAGTCTAAAATACCATATCAATTCaatgcacaatggtgtcacctactcatgtgatatttgtggcaAGACGTTTAAAAGGAAGAGTTATCTGACGAAGCATGTTCAATCAgcgcataatggtgtcacctACTCATGTGATACTTGTAGAAAGGcatttactcaaaaatataaactcaaaatccacatcgaatCGAGGCACAATGGGGTTACTCActtatgtgatatttgcggcgAGACATTTCCATcgaaaaataatctcaaaataCACTTTGTGTCGATGCATAAACGTACTCCTCAAGCATGTGACtattgtggaaaaaaattcaaatatctATCTTGTCTTTATAAGCATGTCAAATCGTCGCATGATGGTACCACCCATTCATGCAAGACATGTGGAAAGACGTTTGGACAAAGAGCAAATCTCAAAGCTCACATCGCTATGGCGCACCGCTCTGCGCGCATTATGATTTAA
- Protein Sequence
- MRHARGVLLLVCKLSIPVRAYTHIYERKIREVSEIKRGWIRLMYHREDFFVRKITRHRRSVSKMSKMESSGLFNCAIRVKDEPCDTSLIENDDNRIDEAPDVKNFRFSREYSTFQESDKNHENEYDEMQILIECKDVKLIMNSLENKKTDDYSPKYLRNMKYSDDETQNAIKIETLDGVQKEMDLNFDCKFTEHNEKRSDQKDFNDKHQLKTNIDSVHTGTKNTCDTCRKTFKRKGDLKRHVQSVHNGVPHSCTICGKTYKWKGDLTRHVQSAHNGVTYSCDICGKLFQYKISLKGHIDSVHNGTKHACDVCGKKFSFKSNLQAHIDSMHNGVKQSCDICGKTLTRKNDLTRHVQSVHNGVTHSCAICGKTYKSKDSLTKHVQSAHNGVNYSCNICGKSFTQKVSLQIHIKSIHNSITYSCDICGKTLKRKDDLKIHVQSVHNGVTYSCDICGKSFPHKTSLKYHINSMHNGVTYSCDICGKTFKRKSYLTKHVQSAHNGVTYSCDTCRKAFTQKYKLKIHIESRHNGVTHLCDICGETFPSKNNLKIHFVSMHKRTPQACDYCGKKFKYLSCLYKHVKSSHDGTTHSCKTCGKTFGQRANLKAHIAMAHRSARIMI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485086;
- 90% Identity
- iTF_01485086;
- 80% Identity
- iTF_01485086;