Tpre009104.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- TIGD6
- Assembly
- GCA_000599845.3
- Location
- NW:1626524-1629081[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.4e-08 7.4e-05 21.9 0.0 12 43 19 51 16 53 0.85 2 2 0.46 4.1e+02 0.3 0.0 25 33 127 135 126 138 0.86
Sequence Information
- Coding Sequence
- ATGGCTCCAAAACGCAAACGCTTAActctaaaagaaaaagttgatattattaatattattgaagaagaaaatttaagcCTTCGGCAAGCAGCTAAAAGATTTGATGTAGGTAAATCGACAATCTCTAATATTCTGCAAACTAAAAATGAGACTCTAAAGTACTCAGAAAAAAATGGTGAtggcaaaaataaaaggaaatttctgaaaaatgaaatggtAATAGTCAACAATGCGGTTTTTAAATGGTTGCGTCaggtaaaattcaaaaataaacccATGCCAGGCAccttgataaaaaagaaggcGACAGaaatagcagaaaaaaataaatttacaaatttttctgtGTCAAATGATTGGTTAGAAAAATTTAGGAAACGTTATGATATTAGTTATACATCTATCTGTGAAGAGAGCGAACGTGTAGATATGATTGTTGTCAATGACTGGTTTTCAAGAGTGAAACATATTTGTAATGGTTATGCAGAAAAAGATGTTTACAATTTAGATGAAACTGGATTATTTTATCGAGCACTGCCAGATGAAACAATGTTACtccaaaataaaaactgtaaCGATGGAAAATTATCCAAAGATCGTCTAACGGTTGTTTTATGTGTAAATAGTATTGGTGAATTTGAAAACCCTGTTATTATTGGTAGAGCTGCTCATCAATCTTGCTTTAGAAATATTGATATAGAATCTTTAGGAATAGTATGGAAGAAGAATACCAAATCGTGGATGACGAAAGATACAATGATACAATATCTAACCAATTTGAACATCAAAatgaaggaagaagaaagaaatatattattatttatggaTAATGCTGCATGCCATCCatcattaatattatcaaatgttaaaatagtatttttccCAGCTATTACAACTGCAATATGCCAACCGTTGGAACAAGgaataatcaaaaattttaaagtattgtatagaaaaaaagttttaagctCTATTTTAACAAGAATTTCACTTGTTTCGTCTGCACACGATCTATCAAAGCAATTGACTGTGCTGGATGCTATAATTTGGATCAAAGCAGCATTATCGGAAATTAAGCATGAAACAGTTACTAAATGCTTCAATAAGTGCGGGTTTTCTACTTCATCAGACTACAGTTCAGATAATTTAGATCCTAACGATGAATCCAAATTAGAAGAACTCGTAAATTCTTTTAATCCAGACATTCATGATAATTACGCCTTAATCGACGAAAATTTAGTAACAGAAAAAGCTTTGATAGAAATTTCAGATTCCGTTCAAAAAgaagcaaatgaaaaagaagattcGGAGACACAGCAACAGGAGTCAAGAATTATAAATTCTTTAGAAGCTTTAGAGtacatgaataaattaaaaaattattttttgcatcgtAATGACGTATCATCATTTCAAAGTATATGCGATGCACAAATGAGTTTTGAAAATGCCTGTATCAAGataacaaaataa
- Protein Sequence
- MAPKRKRLTLKEKVDIINIIEEENLSLRQAAKRFDVGKSTISNILQTKNETLKYSEKNGDGKNKRKFLKNEMVIVNNAVFKWLRQVKFKNKPMPGTLIKKKATEIAEKNKFTNFSVSNDWLEKFRKRYDISYTSICEESERVDMIVVNDWFSRVKHICNGYAEKDVYNLDETGLFYRALPDETMLLQNKNCNDGKLSKDRLTVVLCVNSIGEFENPVIIGRAAHQSCFRNIDIESLGIVWKKNTKSWMTKDTMIQYLTNLNIKMKEEERNILLFMDNAACHPSLILSNVKIVFFPAITTAICQPLEQGIIKNFKVLYRKKVLSSILTRISLVSSAHDLSKQLTVLDAIIWIKAALSEIKHETVTKCFNKCGFSTSSDYSSDNLDPNDESKLEELVNSFNPDIHDNYALIDENLVTEKALIEISDSVQKEANEKEDSETQQQESRIINSLEALEYMNKLKNYFLHRNDVSSFQSICDAQMSFENACIKITK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01483780;
- 90% Identity
- iTF_01483780;
- 80% Identity
- -