Tpre001273.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- -
- Assembly
- GCA_000599845.3
- Location
- NW:1488544-1491272[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.1e-11 5.4e-08 31.9 0.1 1 38 13 50 13 52 0.95
Sequence Information
- Coding Sequence
- ATGGTGAAATCAGCTAGAAGAATACGTGTCTCATATACCcaagaaaatttagaaaaagctATCACTGCCGTTAAAGCAGGGGCATCAGTAAATGAAGCTAGCAGAAAATACAGAATCCCTAGATCAACTCTTTACATTAAAGTATATTCTACATTGGATATTCATAAGCCAGGATCTACTCCTCTTTTATCtcaagaagatgaaaaaaaattgatcaaatgGTTTGATTATATGTTTACTTTGGAGCGACCTGTTACAAAAGACCACTTAATAAATAGTGTTGCTCTTTTggcaaaattatcaaaaaagaatatttacaATGCTGGTAGACCATGTGATTATTGGTGCGAATGTTTTTACCGCCGACAtggaaatttaaaagaaaaaatgcaaaaaagtgcTGTGAAGTCAAAATGCGAACCAAACAAAATTACTTTGATGAGGTGGTTTGatagaattttaaatcaattacaTGTGATGAATCTTACTGATATTGATCCAACACGAGTGTTTAATATTGGTGAGACTATTTTACCTCTAAATCCAAAAAGTTCTCAAATAAATCGTATTTATGAGCGAAAAGGCTTAGTGCTCATTGCAGGAAACGTTGTTGGACATATGGTTCCACCAATGATACTTCTTGATTTTGAATCTACGGATGATTTAACAAAGTCGCCTCAAAATTGGGTCATTAGACAAAGTCATGGAGCTTGGCTAGATtcggaaattttcaaagaatatatacaagatattttttatccttggctcgtaaaaaataatactcaaTTTCCAGTTATTTTATACCTTGATTCTCAcgttcaatttttaactcaacctcttacagaattttttcaaaatcgacAAATAACTGTATTTGTTTTACCTTATAATACTACGGAATTTTTACAACCTTTGGATATTGGTTTGTTCAAGTTCATTGAACAATTTTGGGAAAAAATAGTTCACATTTTcaagattgaaaataaaatggatTATGTGAGACCAAtcgattttattcttttattaaaagaattatttgataatattaGTATGGACGAGTTAATGAgcgaaagttttcaaaaatcaggACTTTACCCTTTATCCGatattgtaattgaaaatacaaACCTCAGTTTACaaaaagacgaaaaagaagatgatgaaCGAATTCATcgttcatcatcatcaaatacacttttaaaatcaatagaaaaattgattgaccCTTTGACATTAAGCACTTTTAGATGTTTGTTAAATGTTGATAAATGGGAGGGGAATCCTGCagatgaaaatcttttttatctttggagaaaagtatataataaaaataaaactggaTCTCATTGCTCTAAGAATACAAATTTGAACGCGGAGGAAAATTGTCTTTCATCCAGAGAATTGAGTTTCAATGAAGATATATTTGATCTACCACTGCGAAGCGCAGATATACCTCAAAATGAACAGCTTACTTCGTTCgaagaaaatatagaaatacGGGATGCTAACACTATTTCAGAAACATGTGACGTAGAAGAATTCATATCTCCCATAAATGTGATAGTAGCAAATTCAAATGACTCTTTGACATTGGATCCAATCGAATTTAATTATcctgaattattataa
- Protein Sequence
- MVKSARRIRVSYTQENLEKAITAVKAGASVNEASRKYRIPRSTLYIKVYSTLDIHKPGSTPLLSQEDEKKLIKWFDYMFTLERPVTKDHLINSVALLAKLSKKNIYNAGRPCDYWCECFYRRHGNLKEKMQKSAVKSKCEPNKITLMRWFDRILNQLHVMNLTDIDPTRVFNIGETILPLNPKSSQINRIYERKGLVLIAGNVVGHMVPPMILLDFESTDDLTKSPQNWVIRQSHGAWLDSEIFKEYIQDIFYPWLVKNNTQFPVILYLDSHVQFLTQPLTEFFQNRQITVFVLPYNTTEFLQPLDIGLFKFIEQFWEKIVHIFKIENKMDYVRPIDFILLLKELFDNISMDELMSESFQKSGLYPLSDIVIENTNLSLQKDEKEDDERIHRSSSSNTLLKSIEKLIDPLTLSTFRCLLNVDKWEGNPADENLFYLWRKVYNKNKTGSHCSKNTNLNAEENCLSSRELSFNEDIFDLPLRSADIPQNEQLTSFEENIEIRDANTISETCDVEEFISPINVIVANSNDSLTLDPIEFNYPELL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01483754;
- 90% Identity
- iTF_01483754;
- 80% Identity
- -