Tpre003771.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- fru
- Assembly
- GCA_000599845.3
- Location
- NW:1709374-1712109[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.8e-06 0.0043 16.2 0.0 1 37 254 290 254 297 0.91 2 4 7.4e-11 6.5e-08 31.6 0.0 1 39 304 341 304 345 0.95 3 4 0.0045 4 6.7 0.0 19 33 372 386 360 391 0.81 4 4 8.4e-11 7.4e-08 31.5 0.0 4 40 418 454 416 458 0.92
Sequence Information
- Coding Sequence
- ATGTCAGCGCACGGAATAGCCGTGCCCGGTGGCGATCCATCTGACAATCAGATGTTTTGCTTTCAAGTGACGGAAGATGATCTGAAGGATCAACTGGGCGACGTCATTAGAGAAGCGTACGAGCGAGAGGATATGCTGGATGTGACATTGTGCGTCCAAGGAGAACGAATACGAGCCCATCGGCCCGTTTTATATGGTTGCAGCGAATTTTTTAAGgaaatttttaatcaaaccaATCATGAAGAGActgtatttataattgatgATGTGTGTGCTGAAGATATGAAGTCACTCATccatttcatttattatggACAAGTTcagatcgaagaaaaatatgttGACAGATTTTTGGAGGCTTGtcatttcttaaaaatttttggattcTCAAATaTAGCAGGATTTGAATTTGAAGAATCAAGTGAAACGTCGAATGATCAAGATATCTGTGAATTTGATACCTCTAGTGAAGCAAACTTAACTGATACACACATATCAGATTCAAATACTAGTACTGAAATTCCTTTACCAAGTTTTTCTATAGAAAATCATACATCAATTACTGATAATCAGAAAACTCCATCAACTactgattttaaaaaagctttatCAACTACCAATATTAAGAAATCTCAATCGATTGCTACTACTGAAGATGCCCCAAGTTTACCCGTTCAGccaacaaaaagaagaaggttGTCTGATTGTCCATTGGGAATTAAATTGACTAAACGGAAAAGTAGTCTTAAAAGAGTATACACTGATGAGCAGTTAGAGGCAGCAATTGCTGATATTCGAGCAGGAAAATCATTGATAGACACTGCTATTCAACATAAGATTCCAAGATCTACTTTGTATGTGAGAGCAAAAGTCTTAAATATACCTTTAGCTCCAACAAAAAATGACTACACACATGAAGATATGAGAGCTGCAATCAAATTAGTTCTTGCTGGATCAAGCTTACAACAATCAGCAGACTGTTATGGAATTCCAAAGACTGTATTATGGAGAAGAATTCAAAAAGAAGGGTGTTACAGAAGTCGaagagacaaaaaaacttATCCAGAAGAATCTAGAAAGGCAGCTGTAAAAGCATTAGAGAAAGGCGAACCACTGTGTAAAGTTTCGCAAGAGTATCAAATACCAAAAACAACATTGTTCAGGGATAAAACCAAATTAATTGATCAAGGTAAATTACCATCAACGATGTATAAAAAGCGAAgtaaagtagaagaagaaatcAAAAGTTCACGTTTAGAAGAGGCAGTAGCAGCTTGTAAAGACGGTATTATGTCACAAAGTGCTGCTTCTGTTAGATTTCAAGTACCAAAAACCACCATTTGGAGAAggcttcaaaaaaataaaacttctaaTACAGGAAAAGGTCATACATGTAAAACCAACAACATAACTTTTGTTAAGAACGGTGAAGACATCGATGACAATTTTGAAGATTATTTAGATCAGACTGATGAAAATTTGGATGCTGCCTATACTTATgtgaatgaaaatcaaattcccAGTGAATCTGTAATTGTCTTAACTCAAGAAGATGTAGAAAGTCTGAATATACCAAATGAAGAATCAGTAGTTCTTGTTGAACAAgACAACGTAGACACTAATTTTGTATCTTGTGGTCTACATTTAGATGATAGTTCTCAAAATGtgatagaaatgaaatttaggatggacaaataa
- Protein Sequence
- MSAHGIAVPGGDPSDNQMFCFQVTEDDLKDQLGDVIREAYEREDMLDVTLCVQGERIRAHRPVLYGCSEFFKEIFNQTNHEETVFIIDDVCAEDMKSLIHFIYYGQVQIEEKYVDRFLEACHFLKIFGFSNIAGFEFEESSETSNDQDICEFDTSSEANLTDTHISDSNTSTEIPLPSFSIENHTSITDNQKTPSTTDFKKALSTTNIKKSQSIATTEDAPSLPVQPTKRRRLSDCPLGIKLTKRKSSLKRVYTDEQLEAAIADIRAGKSLIDTAIQHKIPRSTLYVRAKVLNIPLAPTKNDYTHEDMRAAIKLVLAGSSLQQSADCYGIPKTVLWRRIQKEGCYRSRRDKKTYPEESRKAAVKALEKGEPLCKVSQEYQIPKTTLFRDKTKLIDQGKLPSTMYKKRSKVEEEIKSSRLEEAVAACKDGIMSQSAASVRFQVPKTTIWRRLQKNKTSNTGKGHTCKTNNITFVKNGEDIDDNFEDYLDQTDENLDAAYTYVNENQIPSESVIVLTQEDVESLNIPNEESVVLVEQDNVDTNFVSCGLHLDDSSQNVIEMKFRMDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484006;
- 90% Identity
- iTF_01484830;
- 80% Identity
- iTF_01484830;