Tpre011953.1
Basic Information
- Insect
- Trichogramma pretiosum
- Gene Symbol
- ab
- Assembly
- GCA_000599845.3
- Location
- NW:482856-488914[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 7.9e-08 7e-05 21.9 0.0 9 35 338 363 338 371 0.88 2 6 1.5e-11 1.4e-08 33.8 0.0 9 37 401 428 399 434 0.88 3 6 4.1e-08 3.7e-05 22.8 0.0 9 38 466 494 464 499 0.91 4 6 5.4e-07 0.00048 19.3 0.0 9 38 530 558 530 563 0.87 5 6 9.2e-08 8.2e-05 21.7 0.1 9 37 597 624 597 629 0.90 6 6 1.3e-07 0.00012 21.2 0.3 11 38 678 704 673 706 0.79
Sequence Information
- Coding Sequence
- ATGTCGGAAGAAACGCAGCAACACGACCTGGTGAAACGCATCCAGCTCAAGGAGGACCCGTACTCCAAGGAGGCCATCATGAAGCTGCTGCGCGAGTCCGAGCCCAGCGCGACCCTGTGCTGCGAGTTCGGCGCGGTCGGCTGTCACAAGGGCATCCTGGCGGCGCGAAGCGCCCACCTCATGGAGCTCCTCGGACGCAATCCCTGCGCGCATCCGTTCTTCTACGTGCCCGGGGCCAAGCACGACGAGCTCCAGGCCGTCGCGCACTTCATGTATCACGGCGAGGTCGATATCGAGCTGTCGAAGCTGAAGCACTTTTACAAGGCCGTCGAACCTCTGCAGATTCGTGGCTTGCAATGGAAGAATACGAAAGAAAAATCTGAGGACAAGGTCAATGCAgatgattatgatgatatCTATAGGATAACTTGTGTCTCAAAAAATTCCGAAAATGCAGATCTCAAGAAAGCACTCGTTGTCCTGTACGACAACGAAGAGATGATCGATATGACTTTGGCCTGTGACGATGGCTCCTTCAAATGCCATAAAGCTGTTGTGACTGCATGTAGCGATTAcgtgaaaaatgttttgtctGATTCGTGCAAAGATCCAGTTATCTTCCTTCTCGGTACAAAAAAACGAGAATTGGAAGCTGTAATTGATTTGATGTACAATGGTAGAATCAAAGTAAGAAAATCTGATGTTCAAAGGGTCGTAGAGATTGCTGATCAATTATTCaTTCGTGATTTATCAGTACAATCTATGTTGACCAACGAAAAggataatgaaatttttcaagaacttACCTCAGAGAATGAGCATAATGATTCAAGATCAAATTCATTTGATCAATATCCTGAAAAGAACCCAGATGTTTCTAGCTTTTGCTCAAATGTAGCAAAAGCATTTGATACTCCTcccatgattatttttgattggGGAAAACTTTTACAGGAAAAAAGTGAAGGTTCCCCTCGACGATCATATGGAAGTAGTGAACGCCAAAATGTACTGGATGCTGTGAATCGTGGAATGTCAGGTGCACAGGCTTCGAGACTATTTGGAATACCAAAAAGTACAGTTTACTCGTGGTTAAACAAATATGAAGGACTAAATACAAGTAAAAACTCTGCAGTTCTGAATGAATCTTCATCAGGAACTACACGAAGATCTTACTCAGACGGAGATCGTCAAAAAGTTGTTAGAGCTGTCCAGAGTGGAATGTCCGTCGCAGAGGCTGccataaaatttgatatacCTAAGAGTACACTATATTCTTGGATGAAGAAATCAGACACCTTAGATACCAGTAAAAGCTCTGCAGTCATAAGCTCATCTCCATCTCCTTCAAGTACTACTAGAAGATCTTATTCAGATGCAGATCGCCAAAAGGTATTAGACGCTGTTAGTAGAGGAATGTCTGGTGCAGAAGCTTCCAGGAAATATGATATACCTCAGAGTACAGTTTATTCTTGGGTGAGGAAATCAGATGACTACTTGAGCACCAGTAAAAGCTCTGCACTTGTCGAATCGCCTCCATCAAgcAGTTCTAGACGATCGTACTCAACTGCTGAAAAACAAAGTGTAGTGAATGCAGTCAACAATGGCATGACTGGTGCGGAAGCTTCAAGAAAATATGATATACCATCAAGTACAGTTTACTCTTGGATTAAGAAGTCAGAAAGCCCGGATGCAAGTAGAAGAACTTCTATAAGTTCATCTGTGGATACCTCATATTCTTCTGCATCTGGAAGACGTTCGTACACACCAAGTGAGCGTCAAACTGTCGTCAATGCCATTGCTAATGGTATGAGTGGAGCTGAAGCTGCTAGGACTTATGGAATTCCTCCAAGTACTGTTTATTCATGGAAAAATTCTGTGCCAGCAGCCCCTACAACGAATTACAGCCGCCAATCAAATACCTCTTATGGTTCGTCGAATATTTCGTACGGAGCTTCAAATGCTTCATATGGATCTTCAGGAGGTGGCAGAAGATCGTATTCATCGGGTGAACGATCGGCAGTTTTGAGCGCTATGTCTAGCGGCATGTCAGGAGCTCAGGCCGCCAGGACATTTGGGATTCCTGCGAGCACCGTCTACTCATGGAATCGAAAACGATAA
- Protein Sequence
- MSEETQQHDLVKRIQLKEDPYSKEAIMKLLRESEPSATLCCEFGAVGCHKGILAARSAHLMELLGRNPCAHPFFYVPGAKHDELQAVAHFMYHGEVDIELSKLKHFYKAVEPLQIRGLQWKNTKEKSEDKVNADDYDDIYRITCVSKNSENADLKKALVVLYDNEEMIDMTLACDDGSFKCHKAVVTACSDYVKNVLSDSCKDPVIFLLGTKKRELEAVIDLMYNGRIKVRKSDVQRVVEIADQLFIRDLSVQSMLTNEKDNEIFQELTSENEHNDSRSNSFDQYPEKNPDVSSFCSNVAKAFDTPPMIIFDWGKLLQEKSEGSPRRSYGSSERQNVLDAVNRGMSGAQASRLFGIPKSTVYSWLNKYEGLNTSKNSAVLNESSSGTTRRSYSDGDRQKVVRAVQSGMSVAEAAIKFDIPKSTLYSWMKKSDTLDTSKSSAVISSSPSPSSTTRRSYSDADRQKVLDAVSRGMSGAEASRKYDIPQSTVYSWVRKSDDYLSTSKSSALVESPPSSSSRRSYSTAEKQSVVNAVNNGMTGAEASRKYDIPSSTVYSWIKKSESPDASRRTSISSSVDTSYSSASGRRSYTPSERQTVVNAIANGMSGAEAARTYGIPPSTVYSWKNSVPAAPTTNYSRQSNTSYGSSNISYGASNASYGSSGGGRRSYSSGERSAVLSAMSSGMSGAQAARTFGIPASTVYSWNRKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482569;
- 90% Identity
- iTF_01484789;
- 80% Identity
- iTF_01484789;