Teva002678.1
Basic Information
- Insect
- Trichogramma evanescens
- Gene Symbol
- -
- Assembly
- GCA_902732785.1
- Location
- CACVKI010061970.1:1192-6003[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.29 25 5.7 4.9 2 23 217 239 216 239 0.96 2 20 0.13 11 6.8 2.2 1 23 301 323 301 324 0.95 3 20 0.23 20 6.0 3.0 1 23 372 394 372 394 0.98 4 20 0.00082 0.069 13.7 0.2 1 20 444 463 444 465 0.93 5 20 3.2 2.7e+02 2.4 1.0 3 23 507 527 505 527 0.93 6 20 4.8e-05 0.004 17.6 0.3 1 23 558 580 558 580 0.98 7 20 7.4e-06 0.00062 20.2 0.4 1 23 586 608 586 608 0.98 8 20 2.6e-06 0.00022 21.6 2.2 2 23 646 668 645 668 0.94 9 20 0.013 1.1 9.9 1.0 3 23 677 698 675 698 0.96 10 20 0.0019 0.16 12.6 1.9 2 23 729 751 728 751 0.89 11 20 0.014 1.2 9.8 0.2 2 23 796 817 795 817 0.92 12 20 0.017 1.4 9.6 0.1 2 20 909 927 908 927 0.95 13 20 0.0046 0.39 11.4 0.3 2 23 946 967 945 967 0.96 14 20 0.0018 0.15 12.7 5.2 1 23 990 1012 990 1012 0.98 15 20 0.086 7.2 7.4 2.8 3 22 1032 1051 1031 1054 0.87 16 20 0.2 17 6.2 0.9 1 23 1107 1130 1107 1130 0.95 17 20 0.0036 0.3 11.7 0.8 3 23 1169 1190 1168 1190 0.92 18 20 0.0018 0.15 12.7 0.2 1 23 1197 1221 1197 1221 0.94 19 20 0.079 6.6 7.5 0.7 1 23 1226 1249 1226 1249 0.96 20 20 0.045 3.8 8.3 0.4 3 23 1281 1302 1279 1302 0.95
Sequence Information
- Coding Sequence
- ATGACTAAGTGTTTAATCATGGAAACGAATTTAGAGGAAGCGTGCAGACTCTGTCTGACTACTGAAAAAAAGTGCTCTTCAATCTTTCAACTACCTGCTAGCGATGTTCCTTTTATTGTGAAGATTAAGGCCTGCTTATCAATCCAGGTTTCAGAAACTGACCCAATATCAACTTTCATTTGTGCATCATGCATAGAAAATGTAAATCATTGGTATTTTTACAAAGAATCGTGTCTAAAGTCACAGAATCAGTTACAAGAATGgtttaaaaagagaaatattTCCAAAGCTAGTGCTGATTCAGATCCCTTGGAAAATAATGAAGTAGATGATGAAAATACAAACAAATTTGAAGGAgaaatttctaaaaatcaTAATGATGAACCAACAATCAAGAGTAATGTACCACATAATTGTCTACCCAATAATCCTGAAATTAAAAGTGAACCAATGGATTCTAGTGATGACTATTTTAATGATGATGAGTCAATCAATGATCAAGAACTTCTTGTTAATCCTTTATctcctgaaaaaaataaagctgcaGCAATTGCTTcagaaaaagaaggaggaaTTAAAAACTCACTTAAAAGGAGAATGCGTAGAAGAGGTCACACACATTTTAGGGGTATAaaagtattcaaaaaaaaatgtcctcaTTGTCATCTATATCTGAATTCTAAATATTCATATTATCAACACATCAACAATACTCATAGACAATTAAAAACAGGATCTGAACAACAATCTAAAGCAAATGAACTTTTGGAAAATGCAAAATCAGTATCATCTCCTCTTTCTCAGAATGAAATAAATACGGAACAAATAAGTTatcaaaaattgttaaaaactGATCCTCTTACTcatgaccaaaaaaaaattataagtcagttaaaaacattttcatgttACTCATgtgattcaatttttgaaaatcgtaaAGACACTTTGACTCACATCAGAATTCATCATCCTGATCTTAAATTGTTTACTTGCATAGCTTGTCTTAGCGAATTTCCAGATAAAACGCAGTATAAATTACACTGTGCTGCATCATTTGAATGTGCTATGAAGATTGCTCTTGTCATTCCAGAAGTGGgcactgaaaaatattttacctgCAATATGTGCTTATTATCTTTAGAAAATCGTAAATGTCTTCTCAATCATTTGAGTAAACATTCTGAAAAAAGTAGCAAACAGTTTTCCAGATCTACTCCATTACCTTCACtgatttcaatttcatctccaagtaaaaataaatgtgtatcaaaagttttcatttctTCCCAAGCTGGACCATATGTGGATGGAGATCCAAATCATAATCATGAATGCAATATGTGTGGGATGATTTATCGTTATAAACCAAACTTGATGAAACATAAGATAGTATGCCTCGCTTCACCAGAACATTTAAGATCTACATTTAAGTGCATTCATTGTTGCATGACTTTCCGTGTCTTTGACAAATTCAAATCTCATATATTTCGTTAtcataaaaaacatgaaatgaTTTGCTACAATTGTCACGAATCATATACAGCTGATGTAGATTATCTAAATCATCATGAAATTCATCGTGTGcctataaaaaatgaagagcaGGAACAAAATGATGTTACAAACATAAATTCATCAAATTCTTCAGGAAACCTAAACATAAAACCTTTCAAGTGTGCTCTATGCGGAGAAAGTTttgatcaaaaaattgaacttaCAGAACACCGAAATCTCCATCTTAAAGTTAAATTATATTCATGTGTACTTTGTGGCAACTCTTTTAACAACTCTAGTGCTCTAGAAACtcatatgaaaaatcatgGTATTATTGATGGAGAAACAAACAATTCTATTCAGCAGCTACGTGAAAGTAATGCTGAGCacaaatcaataatttatgcTGGAAGTGGAAATAGTGGAAATAGGCTCAATCAATGTAATGAGTGTGGCAGATGTTTCTCTAATACAGCTAATCTTAACAGACACATAACAAATTTGcatgtattgaaaaaaaagcagtggGATTGTGATCATTGCAGAAGCAAGTTTTATTCAGCTGAAGATTATAACGATCATCTTAGATCAGAGCATGGTCAAAATACTACTGTccaaattgttgaaaatactGCGACCTCTGATCGGGTTTCTATTTTATCGTCTGGAACTGGTAAACCAAATATGAAGTGTCCTCATTGTGAAAGAATATTTGCTTATCAAGCTAATTTGGCTCAACattgtcaaaaaattcataatgtgATAATTCACGATTTTCGGAGTCTTATTCACGTAGCACGATCGCCTCCCCCACCAATACAGCAGCCTTCTGTACGCTCTGTGGCTGTTCGTCATTCGGCTCCAGCTAAACCAAGCAATTCCGGTTGGCCCTGCGATTTATGTGACAGAGTCTTCAAAGAAGAACAGTCTATGAAAACTCATCGAGGTTGGCATATGAGAGAAAATAGTCACCTTCCTATGATCAATCGTAATATTAATAAGCGATCATCCCTTGTTACTCTGCCGAGCTCAACAACTTTAACTCCCCTAAAAACAGTGGGTTATACTACTGTGAGTGTATCTTCAGAACCTAGGCCAGCTAAGGCTCGAAAGTCGTTTATCAACAATCCTCAGCGTAAGCAATTAGATGTTATAGCTAGTTCTACATCATCAACAAAAGCTCCATCCGAAACTCAAGACACTTCCTTGTCTACTTCATCGGATATTCAATGCCAAGTTTGCAAAGAAAGCTTCCCAAACTTGGATGTCTTAAGCAGGCATCTGTGGGATGTTCATTGTTCTTCAAATAAACCTGACAAGACCTCAACTAGTGAGATGCAATGTCTATTATGTTCAAATAAGTTTCCTGATAACGAATCCTTAAATGAACATATGCTTCAGCACACAACTGAACCTTCTCAAAATAGTAGTATTGCAGATGCACACTTGAAATCTGTTAAGAGTAACTGCTTTCATTGTGACATATGTGGCAAGAATTATACAAATCGCAAAGTATTTTtcagacataaaaaaatgcacaaaGCATTACCACCAAATGCCGCAAATTTTCAGTCCTTGAATACTAAAAGACCTTACTGTCATCCATGTCAAAAAGCATTTTCAAATGATGCCTCTTTAAGAAGACACAAAATTTCAGCTTGTcatcataattatattaaatccCATATAGTAACACCTAAAAAATTGACAACTACTGCCATTGTTCACCAAACATCTCATGATTCTCAGATTCAACAGaTAAAAACTGAACCAGACATGGAGGAATATATGGAAGAAGATAGTCCTACAAAGAAAAAGCAATATACGTGTTTAACATGTAATGTTACTTTTCCTAACATGAGTATACTCTACCAGCACAAACAGCGCATGCATAAAGTTCCCGAGAAAGAGCAAGTCATTGGCGGAGTATCTTCGCAGCAAGTCAAATCGCCAGCTAGACCATTATATGTTGCAGTTAAGAATCAAAAACAAAACGGTTTAGTTGATTGTAATCTTTGCGGTAAACAATTTCCTGGTATATCAAATTTGAAGCTTCATTATGCTCATAAGCACAAATCGGAAGGAAAAACGTTTGCTTGTACAAGCGCTGGTTGTAAACAAAGCTTCACAAGCATCAGTTTACTAAAAGCGCATGAGACGATGCATTCAAGCATTATGTACAATTGTCGTCTCTGTGAAAGACATGTATTTTCAAGGAGCGCTATTATCAAGCATATGTTGATTGCTCATAAAGCTTTGTATAAATCAGGAGCTGACACAAATAGTTTGTGGTCAACTGTAGATCTCTCGGCGTACACTATCAAAAATTGTCAAGGTACTTTTTGTACTATTTGCAGAGTTAAGTATCCAAATCTCAGAGCATTAAAAatccattatttgaaaatccaTGAGCAGAATAATTAG
- Protein Sequence
- MTKCLIMETNLEEACRLCLTTEKKCSSIFQLPASDVPFIVKIKACLSIQVSETDPISTFICASCIENVNHWYFYKESCLKSQNQLQEWFKKRNISKASADSDPLENNEVDDENTNKFEGEISKNHNDEPTIKSNVPHNCLPNNPEIKSEPMDSSDDYFNDDESINDQELLVNPLSPEKNKAAAIASEKEGGIKNSLKRRMRRRGHTHFRGIKVFKKKCPHCHLYLNSKYSYYQHINNTHRQLKTGSEQQSKANELLENAKSVSSPLSQNEINTEQISYQKLLKTDPLTHDQKKIISQLKTFSCYSCDSIFENRKDTLTHIRIHHPDLKLFTCIACLSEFPDKTQYKLHCAASFECAMKIALVIPEVGTEKYFTCNMCLLSLENRKCLLNHLSKHSEKSSKQFSRSTPLPSLISISSPSKNKCVSKVFISSQAGPYVDGDPNHNHECNMCGMIYRYKPNLMKHKIVCLASPEHLRSTFKCIHCCMTFRVFDKFKSHIFRYHKKHEMICYNCHESYTADVDYLNHHEIHRVPIKNEEQEQNDVTNINSSNSSGNLNIKPFKCALCGESFDQKIELTEHRNLHLKVKLYSCVLCGNSFNNSSALETHMKNHGIIDGETNNSIQQLRESNAEHKSIIYAGSGNSGNRLNQCNECGRCFSNTANLNRHITNLHVLKKKQWDCDHCRSKFYSAEDYNDHLRSEHGQNTTVQIVENTATSDRVSILSSGTGKPNMKCPHCERIFAYQANLAQHCQKIHNVIIHDFRSLIHVARSPPPPIQQPSVRSVAVRHSAPAKPSNSGWPCDLCDRVFKEEQSMKTHRGWHMRENSHLPMINRNINKRSSLVTLPSSTTLTPLKTVGYTTVSVSSEPRPAKARKSFINNPQRKQLDVIASSTSSTKAPSETQDTSLSTSSDIQCQVCKESFPNLDVLSRHLWDVHCSSNKPDKTSTSEMQCLLCSNKFPDNESLNEHMLQHTTEPSQNSSIADAHLKSVKSNCFHCDICGKNYTNRKVFFRHKKMHKALPPNAANFQSLNTKRPYCHPCQKAFSNDASLRRHKISACHHNYIKSHIVTPKKLTTTAIVHQTSHDSQIQQIKTEPDMEEYMEEDSPTKKKQYTCLTCNVTFPNMSILYQHKQRMHKVPEKEQVIGGVSSQQVKSPARPLYVAVKNQKQNGLVDCNLCGKQFPGISNLKLHYAHKHKSEGKTFACTSAGCKQSFTSISLLKAHETMHSSIMYNCRLCERHVFSRSAIIKHMLIAHKALYKSGADTNSLWSTVDLSAYTIKNCQGTFCTICRVKYPNLRALKIHYLKIHEQNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485506;
- 90% Identity
- iTF_01485506;
- 80% Identity
- -