Teva006669.1
Basic Information
- Insect
- Trichogramma evanescens
- Gene Symbol
- -
- Assembly
- GCA_902732785.1
- Location
- CACVKI010143767.1:16354-18353[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.012 1 10.1 0.3 2 23 154 175 153 175 0.91 2 12 6.8e-06 0.00057 20.3 1.0 1 23 181 204 181 204 0.94 3 12 1e-05 0.00087 19.7 3.0 1 23 210 233 210 233 0.94 4 12 0.00062 0.052 14.1 1.2 1 23 239 262 239 262 0.96 5 12 0.0008 0.067 13.8 0.2 1 23 304 327 304 327 0.97 6 12 0.00036 0.03 14.9 0.2 1 23 335 358 335 358 0.97 7 12 0.0014 0.12 13.0 5.9 1 23 364 387 364 387 0.90 8 12 0.00015 0.013 16.0 0.4 1 23 393 416 393 416 0.92 9 12 0.00042 0.036 14.6 0.0 1 23 422 449 422 449 0.96 10 12 7.6e-06 0.00064 20.1 0.5 1 23 455 478 455 478 0.96 11 12 0.0033 0.27 11.8 0.1 1 23 484 507 484 507 0.90 12 12 7.4e-05 0.0063 17.0 1.8 1 23 513 536 513 536 0.94
Sequence Information
- Coding Sequence
- ATGGAATTTGAGTCAAGCAGATACCGCTCGGATCAtACACATGACCCAATCCATTTGATGTCAATAGAAAGAGATCATTCTTATTACTTAAAAGTGTCTGATGTGCCTGATGAATACgTCAAAGTGTCGCAAACGGGTCCTTGTGTAAATGTAGATATTCCCGCAGGACCTTCCAACAATCGTGCAACGGCTTCAGACAATTACGAATCAGATTCTGTCGAAATTGTGTCAGAATTCGAAACTGAAGATGTCAAGCTGGATGTAAACTCATTGGTCGCATCGAATTGTAATAACTCAAACGGCGACGTTAAggtgaatgaagaaaaaattccaaaaattgaagatataGTATTTGTGGACGTGTTAaatctcgacgacgacgacgacgattacgAACCGCCTGTATTTCATAGAAGCAATCGCATCAACGAGGTGCAGACCAATAACACCGAATTCGTAAAGTGTGACTTGTGTAAAAAATCGATAAGCAGCAAAAACTTGCAAAATCACATAGACgcagtgcataatggtgttaGACCTCACAAGTGCGACGAGTGCGGCAAAGCAttcggtaaaaaaaagttgctcgAGAGGCACACCAACGGCGTTCACAAGCAAATCAGGAATTTTACCTGCGGCCAGTGTCAGAAATCTTTTACGCAAAAGTGCGACCTCAAAAGGCACGTTCTCGAGGTACACCAAGATTTCAGACCCCACAAATGCACCCTGTGCCCGAACACGTACAAGAAAAGTTCCACGCTCGCGCTGCACATCGCCAAAGTGCACCGCGATGAAAATACCGACGACGCAACGACCAACTGTACGAAAACCAGCGCCACCGTGGTAAAAATCAACGACGCACAGAGTCAAAGTATCGGCGACGACAAAGTCGTCGTACTGGGCGACTTCTACAGCTGCGGCGAGTGCGACAAGAAGTACATACTCGAGCGCATGCTGAGGGATCACGCGCGCAGGGCGCACGGCAAGCTCCCCGAGGCGACCCATCGCTGCCCGGTGTGCGAGACGGGCTTCGCCGAGAGGAAGGCGCTCGAGGCGCACTTCAGGAGCGTGCACGAGGGCATCAAGCCGCACGCCTGCCAGCACTGCAGCAAGACCTACAACAGGCGCCACCAGCTCAAGCAGCACGTCGAGGCGACCCATCTGGGCCTGCGGCCGCACGAGTGCCCGGAGTGCGGCAAGCGCTTCGGCCTCAAGCTCGGCCTCAAACGTCACCGGGCCGAGGTGCACCGCGGCCTCAGACCGTACCGCTGCGAGCTCTGCCCGCCCGGCCGCGACAAGGCCTTCAGGCAGCCCAGCCAGTTGCGCGAGCACGTGGACACGGCCCACCGGGGCATCAGGCGCTTCGAGTGCGCCGACTGCGGCAAGCGCTTCGGCAAGAAGCCCCATCTGCGCGTGCACCTCGTGACGGTGCACCTCGGCCACAGGGCCCACAAGTGCGCCGAGTGCGCGAAGGCGTTCGGCCAGATCGGCGACCTCAGGAAGCACGTGGACGCGATTCATCGGGGCATGAGGCCGTACGCCTGCGAGCAGTGCGAGCGCAGCTACGGCCAGAAGTCGCACCTGACGCATCACGTGAACGCGGTGCACTACGGCGCCAAGCCCCACCTGTGCCCGGTCTGCTGCAAGGCGTTCTCCGCGAGGACCGTGATCAGGCGTCACTTCAAGGCGATGCACAAGGGCCTGGTGCTGGAGGAGCTCGAGAAGAACAGGGTGAAGCTCGAGCAGCTGGAGAAATGTGATTGa
- Protein Sequence
- MEFESSRYRSDHTHDPIHLMSIERDHSYYLKVSDVPDEYVKVSQTGPCVNVDIPAGPSNNRATASDNYESDSVEIVSEFETEDVKLDVNSLVASNCNNSNGDVKVNEEKIPKIEDIVFVDVLNLDDDDDDYEPPVFHRSNRINEVQTNNTEFVKCDLCKKSISSKNLQNHIDAVHNGVRPHKCDECGKAFGKKKLLERHTNGVHKQIRNFTCGQCQKSFTQKCDLKRHVLEVHQDFRPHKCTLCPNTYKKSSTLALHIAKVHRDENTDDATTNCTKTSATVVKINDAQSQSIGDDKVVVLGDFYSCGECDKKYILERMLRDHARRAHGKLPEATHRCPVCETGFAERKALEAHFRSVHEGIKPHACQHCSKTYNRRHQLKQHVEATHLGLRPHECPECGKRFGLKLGLKRHRAEVHRGLRPYRCELCPPGRDKAFRQPSQLREHVDTAHRGIRRFECADCGKRFGKKPHLRVHLVTVHLGHRAHKCAECAKAFGQIGDLRKHVDAIHRGMRPYACEQCERSYGQKSHLTHHVNAVHYGAKPHLCPVCCKAFSARTVIRRHFKAMHKGLVLEELEKNRVKLEQLEKCD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -