Teva011019.1
Basic Information
- Insect
- Trichogramma evanescens
- Gene Symbol
- -
- Assembly
- GCA_902732785.1
- Location
- CACVKI010145068.1:72650-73960[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00067 0.056 14.0 0.3 1 23 93 116 93 116 0.98 2 11 0.00012 0.0099 16.4 2.3 1 19 122 140 122 149 0.95 3 11 0.0014 0.12 13.0 2.4 1 23 149 172 149 172 0.97 4 11 9.5e-08 8e-06 26.1 1.0 2 23 221 243 221 243 0.96 5 11 2.7e-07 2.2e-05 24.7 2.3 2 23 253 274 252 274 0.97 6 11 4e-06 0.00034 21.0 4.2 1 23 279 301 279 301 0.98 7 11 0.00017 0.015 15.9 4.8 1 23 306 328 306 328 0.97 8 11 0.00014 0.012 16.2 5.7 1 23 333 356 333 356 0.95 9 11 1.9 1.6e+02 3.2 1.9 2 19 362 379 361 382 0.90 10 11 8.8e-06 0.00074 19.9 1.2 2 23 385 407 385 407 0.97 11 11 3.3e-06 0.00028 21.3 2.0 1 23 411 434 411 434 0.96
Sequence Information
- Coding Sequence
- ATGTTTCTCAACCAAGTTATAACAGATAAACAATCGAGCTCGGAgtattatcataaaaaatttagaagaaCTCATAGTTCGACAAATTTCGAGCGCGAGTTCAAGCAGGAAATCAAATCAGAGGAACATGTTGTGagtgaaataataattgtaaaaagcGACGTTTCGGTGGacatcaataataatgatgtatCGAGTGATGCAAAAACGCAGGACATCAATAACAAcgatgtatcgagcgatgcaAAAACGGAATCCAACGCGGaggaaaaatcattcaaatgtGACTCGTGTCCCAGAGGGTacgcgtcgaaaaaaattttaatcaggCACCAGCGAATCGTTCACACGGTAATCAAGGAACATCCTTGCGAGACGTGCGGCAAGATTTTCAAGTTCAAGCGAAATCTGCGGGCGCACTTTTGGAAGGCTCACACGAAGAGACATCGCTGCGACGCGTGCGACAAGACGTtccagagcgagagagatttcGATCGTCACAAGAGGGTCAAACATCCGTCCATCGAGAAGGACAAGTCGCAGGACAAGCGCGATGATAAATTCgcacaaaaaatcaatcatttgGACAAGAGTCGCGCCAAAGTCGAGCACGATAAGAGACGAGGAGTCATCAAGAAAGATAAAGTTGAAGCGGAAAATAGATGCGACGAATGTGGCAAAGGATTTTGTAATAAGTATAATTTGATAAGACACATAAATATTGGACACCTTGGTAAtgtgaaggaaaaaaagcttaaaTGTGATCATTGCAATAAGATGTTCCGGGACAAGGATCAATTAGAGAAGCACGTACAAGTGCACAAAAGCCAAAAACATAAATGTGATCACTGCAATAAGATTTTCCAGGATAAGGATCAATTAGAGAAACACGTAAAAGTACATAAAAGACCGAAACATAAATGTGATCATTGCAATCAGATGTTCCAGGACAAAAATCAACTAGAGAAACACGCAAAAGAGCACGAAAGTCAAAAGCACAAATGCGATCATTGCGATAAATCATTTGTGTGGAGCTATCATTTAAGAAGACACTTGCTGCAAGTCCACCAAGACACAATGAAAAAGTGCGAATTTTGTGAGAAAATATACGAATTCAGGTCCGGTCGGAACAATCACGAATGCGACGGACCCAAATGCGTCAGATGCGATATGAAATTTTCGTCGAGATACACCTTATTGAGACACATGAGGGTTGTCCATCAAACGGAACATAAATGTAGCGATTGTGGAAGGatgttcattaaaaaagtaagtttGAACCAACACAGACGCGAGGTACACAAGTCGTGA
- Protein Sequence
- MFLNQVITDKQSSSEYYHKKFRRTHSSTNFEREFKQEIKSEEHVVSEIIIVKSDVSVDINNNDVSSDAKTQDINNNDVSSDAKTESNAEEKSFKCDSCPRGYASKKILIRHQRIVHTVIKEHPCETCGKIFKFKRNLRAHFWKAHTKRHRCDACDKTFQSERDFDRHKRVKHPSIEKDKSQDKRDDKFAQKINHLDKSRAKVEHDKRRGVIKKDKVEAENRCDECGKGFCNKYNLIRHINIGHLGNVKEKKLKCDHCNKMFRDKDQLEKHVQVHKSQKHKCDHCNKIFQDKDQLEKHVKVHKRPKHKCDHCNQMFQDKNQLEKHAKEHESQKHKCDHCDKSFVWSYHLRRHLLQVHQDTMKKCEFCEKIYEFRSGRNNHECDGPKCVRCDMKFSSRYTLLRHMRVVHQTEHKCSDCGRMFIKKVSLNQHRREVHKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485348;
- 90% Identity
- -
- 80% Identity
- -