Teva003486.1
Basic Information
- Insect
- Trichogramma evanescens
- Gene Symbol
- -
- Assembly
- GCA_902732785.1
- Location
- CACVKI010143728.1:1524-3581[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 2.6e-05 0.0022 18.4 0.3 1 23 14 37 14 37 0.92 2 14 5.9e-07 5e-05 23.6 0.6 1 23 43 66 43 66 0.90 3 14 0.11 9.1 7.1 0.1 1 10 72 81 72 88 0.82 4 14 4e-05 0.0033 17.9 0.3 1 23 91 114 91 114 0.96 5 14 7.8e-05 0.0065 17.0 3.0 1 23 120 143 120 143 0.92 6 14 2.1e-06 0.00018 21.9 0.7 1 23 149 172 149 172 0.92 7 14 1.2e-05 0.00097 19.6 0.9 1 23 178 201 178 201 0.93 8 14 1e-06 8.4e-05 22.9 1.2 1 23 207 230 207 230 0.96 9 14 1.1e-06 9.2e-05 22.8 1.3 1 23 236 259 236 259 0.94 10 14 2.1e-06 0.00017 21.9 0.4 1 23 265 288 265 288 0.97 11 14 4.2e-05 0.0035 17.8 0.3 5 23 298 317 295 317 0.92 12 14 2.9e-05 0.0024 18.3 0.2 1 23 323 346 323 346 0.93 13 14 3.4e-06 0.00028 21.2 0.2 1 23 352 375 352 375 0.94 14 14 0.00011 0.0092 16.5 0.7 2 23 380 404 380 404 0.95
Sequence Information
- Coding Sequence
- ATGAGACACATAGATGGAgttcatttgaaaatcaaagatCATCAATGCGAAGAGTGCGGCAAGTTATTTGGACAAAGGACAGATCTCCTGAGGCACATAGATGGAGTTCATTTAAAACTCAAGCAACACATATGCGAAGAGTGCGGAAAATCTTTCGAGCGAAGGGATAATTTGATGCAGCACATAGATTTTGTTCATTTGCAACTCAAAGCACATATGTGTAAAGAATGTGGAATGTCCTTTgATGTAGTTCATTTGCAACTCAAAGAGCACATGTGTGAAGAATGTGGAATGTCCTTTGGTACGAAAAGTGTCGTGAATAGACACATTGCTAcggtacataaaaaaatcaaagatcaCAAGTGCTTTGAGTGTGGCAAGTCTTTTGGAGAGAAGAGTACTTTGACGCAGCACGTAGATCATGTTCATTTGAAACTCAGAGAGCACATGTGTAAAGAATGTGGGAAATCTTTTGATATTAAAAGGAACTTGAATAGACACATTGCTGCAGtccatgaaaaaatcaaagattaCAAATGTGAAGAGTGCGGCAAATCGTATGGAGTGAAGAGTACTTTGACGCAGCACGTAGATCATGTTCACTTGAAACTCAGAGAGCACATGTGTAAAGAATGTGGAAAATCTTTCGGTTATAAAAAAGACTTGAATAGTCACATTGCCACAGtgcatgaaaaaatcaaagatcaCAAGTGCTTTGAGTGTGGCAAGTCTTTTGGAATGAAGAGTAATCTTATGAGGCACATAGATCTAATTCATTTGCAACTCAAAGAACACACGTGTGAAGATTGTGGGGAATCTTTTGGTATTAAAAGGAACTTGAATAGACACATTGCCActgtacatgaaaaaatcaaagatcaCAAGCGCTTTGAGTGTGGCAAGTCTTTTGGAAAGAAGAGTAATCTTATGAGGCACATAGATCTAATTCATTTGCAACTCAAAGAACACACGTGTGAAGATTGTGGAAAGCCTTTCACTGCTAAAAATGTCTTAAACAAACACATTGAAGCAGtccataaaaaaatcaaagactACAAGTGCGAAGAGTGTGGAAAGTCTTTCGGATGGAAAAGTAATCTGTTGAGGCACATAGATCTAGCTCActcaaaactcgaaaaatgcACAAGCGAAGATTGCGGAAAAATTTTCAGTAGTGGTAAAAGTTTAATCAATCACAGGAAGAAAGTCCATGGAAATAATATCAACAAAGactataatgtataa
- Protein Sequence
- MRHIDGVHLKIKDHQCEECGKLFGQRTDLLRHIDGVHLKLKQHICEECGKSFERRDNLMQHIDFVHLQLKAHMCKECGMSFDVVHLQLKEHMCEECGMSFGTKSVVNRHIATVHKKIKDHKCFECGKSFGEKSTLTQHVDHVHLKLREHMCKECGKSFDIKRNLNRHIAAVHEKIKDYKCEECGKSYGVKSTLTQHVDHVHLKLREHMCKECGKSFGYKKDLNSHIATVHEKIKDHKCFECGKSFGMKSNLMRHIDLIHLQLKEHTCEDCGESFGIKRNLNRHIATVHEKIKDHKRFECGKSFGKKSNLMRHIDLIHLQLKEHTCEDCGKPFTAKNVLNKHIEAVHKKIKDYKCEECGKSFGWKSNLLRHIDLAHSKLEKCTSEDCGKIFSSGKSLINHRKKVHGNNINKDYNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -