Basic Information

Gene Symbol
SMARCC2
Assembly
GCA_902732785.1
Location
CACVKI010140447.1:51913-56056[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 7.6e-15 8.6e-12 45.1 0.3 3 44 626 667 624 669 0.95

Sequence Information

Coding Sequence
ATGCTAACGCTGGGCCCCAAAAAAGACGGTGGCCCGAATCTCAAATTCTTCGACTCGCCGGAGATCCTCAGCCAATTGGATGGAGTCAAGCAGTGGCTTTTGAAGAATGCCAAAAAATATGTACAAAATGATGTGCCCACCAACAAAATTCTTTCTACCCTTACGGTACAAATCCTTCAATTTCAAGAAGACAATCTTGGTAAAAATAATACCAAACCGGTCATGACAAAAATTCCTATGAAATGCTTTTTAGACTTTAAACCAGGCGGTGGATTGTGTCATATCTTATCAACTGCATACAAGTTTAAACAAGAGCAAGGATGGAGAAGATTTGATTTTCCTGTTGCAAAGACAGGTACTCGTATGGATAGGATGCTAGAAATGCTTGTAGCCAtagaaaaagatttaattcaAAGCAGATGTTTGATTGTGCCAAACATATTTGTAAGATCAGATGTTGATAAAACTACTGCAAGCAAAGTTAAAGATATAGTGCGAAAACATCAAGGTACCATCGCTGAAAATGAAGATGATGCTACTCACACTATTTTTCCTGTAGCTGATCCATTAGAAGAAGAATATGCAAGGCCTTGTTTCCGCAGAGATCGAAATGTTCTCTTTCACTGGTACTACTTTCCTGATAGCTATGATTCATGGATTAATTTTGAACTTCCATGGGACTATCCTGAAACCAATCTGGGTAGTGCCCCAGTAAAAACAACTTATAAAGTATCTGCATCTTGGGCTTTAGACTTGGAACAGTACAATGAATGGATGAACGAAGAAGATTACGAGGTTGATGATAATGGTCAGAAAAAAGTGCACAAGTTTAGACTGTCCGTAGAAGATTTAATGGCTCCTCAATCTCAACCTTCTGCTACGAAAAAGCAAAAGCGTAAGCGTTCTCCAACACCTCCACCCAAAGTAGGAAAAAGGAAGAGtgGAAGAGGACCTGCTGGAGTTCAGAGTGGTCCTGCCTCAGGGCCAAAAAAATCTCGATCAGGCatagacgaagaagaagatttGACACAAGGCATGGAAGAGCCTGTTGCAGAACCAAGAATAGTTGAAGTAACAGCTTCGAATAGTAATTCTCAAAATTCAACTCAAAACAGTTCGGGTACTTCTTCTAGTAGTAAAAAACAAGACAATGAACTGCAACCATTAAAATCTGGTAATATGGCAGATCTTGATGAACAAACAGATgATAAAAGCAATTCACAAGCATCTCAAGACAAAGAAGAAAGAGATGCCAATAGAGAAAGGGCTGAAAGTAAGAACGACGATTTGGAAGATAACGTTACTGAGCAGACTCATCACATTGTTGTACCAAGCTATTCTGCTTGGTTTGATTACAATTCTATTCATACAATTGAGAGACGTGCtctttcagaatttttcaatggcAAAAACAAATCAAAGACTCCTGAAATTTATCTAGCCTACAGAAATTTTATGATTGATACATATCGTCTCAATCCCACTGAATATATTACATCAACAGCGTGTAGACGTAACTTGGCTGGAGATGTATGTGCTATTATGAGGGTTCATGCATTTTTGGAACAGTGGGGTCTCATCAATTATCAAGTTGATGCTGATCTTCGACCAACACCAATGGGTCCACCACCTACTTCTCACTTCCATGTTTTGTCAGATACACCGTCAGGTTTAGCACCCGTCAACCCTAACCCACCAAAGACACCTCAACCATCAGCAGCTAAAACTTTAATTGATCTTGATAAGAAGCCTGTGATGGATGAGAATGGTAAGATTCCAAATGCCGGTCCTATGGGCAATTTTGGTCTTAAGATTGATCAATACACAAAGAAACCAGcggttttgaaaaacaaacaagTTGCTGGTGCCACAAGGGATTGGACAGAACAAGaaactttattattacttGAAGGTCTTGAACTCCACAAAGATGATTGGAATAAGGTATGTGAGCATGTTGGTACTAGAACTCAAGATGAGTGTATACTGCACTTCCTACGATTGCCTATCGAAGATCCCTACCTTGAAGAACCAGAAGGACTTGGACCATTAGCTCACCAGCCTATACCTTTCTCAAAGGCTGGTAATCCTGTAATGAGTACTGTAGCTTTCCTTGCATCTGTCGTGGATCCCAGAGTAGCAGCAAGCGCTGCTAAGGCGGCAATGGAGGAGTTTGCTGCTATCAAGGATCAAGTACCAGCTAATTTACTTGATCAGCATTTGCGCAATGTTCAAAATAGTGCGAATTCCGATGGCAAATTTGATCCAGCTGCAGGATTAGCTGAATCAGGTATAGCTGGTACAGCGCCAGATCCTCCAGAAGAATCTAgtgacaaaaataaagaaaaatcagcAGCTACGTCACCACAAGCTTCAGGAGATGGTAAAAAAGATGAAGCTACTGTCTCAACAGACGGCGCTGCCGATAAAACGAAAGAAGGTGCTACAGAATCCGCAGGTACTGCTCCTGCAACACCAGCTACTGAAGGAGGTTCTCCCAAAGATAGTGCTGCAGCAActactgaaaatgaaaaattgacagAACCGAAGAAAGAAATGGATACAGATGGTGAAGCAACTGCTGAAACAAAGTCTGatgaaactgaaaaaatggaaattgaTGAAGAGGCGAAAGACAAAAACgatgaaagtgaaaataagaaaaaatctgATGGCGAAGATAGCGAGGCTAAACAAAAGAAAGACAAATTGGTGCGAGATGCTCAACTTCAatctgcagcagcggcagcattaGCTGCTGCGGCTGTAAAAGCTAAACATTTAGCAGCAGTAGAAGaacgaaaaatcaaatcgCTTGTAGCTTTGCTTGTTGAGACTCAAATGAAGAAACTGGAAATCAAACTTCGCCACTTTGAAGAGTTGGAAACTACAATGGAGCGTGAACGCGAAGGTTTAGAGTATCAAAGACAACAACTTATTACTGAAAGACAACAATTTCACTTGGAACAGCTTAAAGCAGCAGAATTTAGGGCACGTCAACAAGCTGCTCAGCGAATGCAACAACAAGCTCaagaacagcagcaacaactcgcccaacagcagcagcaacagcaacaacaacagcagcagcaacaacagcaacaacagcagcagcagcaacatcaacagcagcaacagtcaCAGCCTCAAACACAACCACAACCGCAACCGCAACCGCAACCACAGCAACCGTCAAGTCCACAAACGCAACCACCTCATACGCCTCCGCAGCAACCAGCTTAA
Protein Sequence
MLTLGPKKDGGPNLKFFDSPEILSQLDGVKQWLLKNAKKYVQNDVPTNKILSTLTVQILQFQEDNLGKNNTKPVMTKIPMKCFLDFKPGGGLCHILSTAYKFKQEQGWRRFDFPVAKTGTRMDRMLEMLVAIEKDLIQSRCLIVPNIFVRSDVDKTTASKVKDIVRKHQGTIAENEDDATHTIFPVADPLEEEYARPCFRRDRNVLFHWYYFPDSYDSWINFELPWDYPETNLGSAPVKTTYKVSASWALDLEQYNEWMNEEDYEVDDNGQKKVHKFRLSVEDLMAPQSQPSATKKQKRKRSPTPPPKVGKRKSGRGPAGVQSGPASGPKKSRSGIDEEEDLTQGMEEPVAEPRIVEVTASNSNSQNSTQNSSGTSSSSKKQDNELQPLKSGNMADLDEQTDDKSNSQASQDKEERDANRERAESKNDDLEDNVTEQTHHIVVPSYSAWFDYNSIHTIERRALSEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDADLRPTPMGPPPTSHFHVLSDTPSGLAPVNPNPPKTPQPSAAKTLIDLDKKPVMDENGKIPNAGPMGNFGLKIDQYTKKPAVLKNKQVAGATRDWTEQETLLLLEGLELHKDDWNKVCEHVGTRTQDECILHFLRLPIEDPYLEEPEGLGPLAHQPIPFSKAGNPVMSTVAFLASVVDPRVAASAAKAAMEEFAAIKDQVPANLLDQHLRNVQNSANSDGKFDPAAGLAESGIAGTAPDPPEESSDKNKEKSAATSPQASGDGKKDEATVSTDGAADKTKEGATESAGTAPATPATEGGSPKDSAAATTENEKLTEPKKEMDTDGEATAETKSDETEKMEIDEEAKDKNDESENKKKSDGEDSEAKQKKDKLVRDAQLQSAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAAQRMQQQAQEQQQQLAQQQQQQQQQQQQQQQQQQQQQQHQQQQQSQPQTQPQPQPQPQPQQPSSPQTQPPHTPPQQPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01484571;
90% Identity
iTF_01482332; iTF_01484571;
80% Identity
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