Basic Information

Gene Symbol
SNAPC4
Assembly
GCA_902732785.1
Location
CACVKI010142666.1:1533-4207[+]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 0.054 61 3.9 0.0 13 43 220 255 212 258 0.77
2 5 5.5e-13 6.3e-10 39.1 0.7 1 44 264 309 264 311 0.96
3 5 1.3e-07 0.00015 21.9 0.1 4 44 321 365 318 367 0.96
4 5 5.3e-13 6e-10 39.2 0.0 1 45 373 418 373 419 0.95
5 5 2.7e-13 3e-10 40.1 0.3 4 41 427 464 424 468 0.94

Sequence Information

Coding Sequence
ATGATCAAACCTGAAGATAGTCAAAGTTTATTAGATGAAATTCAAGCATTGGAAGATGCCTTGGTTGCTCAAGGAGGTTCAAGTCCTGAATGCaatcaaaaaacttttcatcagtttcataaaaatgaaaatgaagatatgATGGATAttgatttatatgaaaatgaaagtgaTTACATGGATGTCGATTCAGTCGAAAAAGACAACGATGAATACCAGTTTGATCGTAACTGTAATAATTTACAAGACTTATTAGAAATGAATAAGGTTTTATTCGAATCAATATCTACTGCCCGTCAAAAGATGACTAAAATGCTTGTTGATTGTCAGAATAAATTACATTCAATTGAAGGGCAAATAGCAAACCAACAAACTAATGTTTatcacaataaaattatatgtttTAATGCTGGTATGCCATATTTTAAGgatcgaaattattttcatcctCAAAGAAATGaagatacagaaaaaaaaataaaaaatggtgaATTAAGGCTCGGTAAACTTCAAAGAATACACAAATGGAATCCTGCTGATAAAAGTATTTTGTTGCAATCGATAAAACATGAAGTGAATcttaaaatatcgaaaaagcaAGAAATGGAAAATATGAATGGTGCAATTACTAAAACTAGTCAATTACCAAAAGATGTTAAACAAGCTATTGGATCTTTGGGAAATATGAAATTTGATTGGTTGAAAATATGTAATATGATGCCAGAAAGTAAGCATAATGCCGAAGAATGTGAAGTTATGTGGAACGTGTTTTTACATCCAGATATTAATAAACAAAGATGGACAGCACAAGAAGATAAAAATCTTAATAAAATAGTTGATGAACATGAAAATGAAGACTGGGATAGAATTGCAAGAAATTTAAATACTGGTAGAAGTGGTTATCAATGTTTTGTTCGTTACAATacaaataattggaaaaatttgatgaaaggTGTGCTATGGTCAGCCAGAGATGAtactatattattaaaattagtcGAGAAACTGAAAATGGGAGATTACATTCCTTGGGGGTACATTGCAAGCTGTATGAATAATTGGACTAAACAGCAGgtATATTTTAGATGGAATTATAGTTTGGCACCTTACCTTAAAAAAGGGAGGTACACCGCAGAAGAAGACAAATTACTTTTAAGTGCAGTCAAcaaatatggaaaaaattttacacaaatATCTGCTTTGGTAATGCCTCATAGAACTAATATTCAATTGAAAGAACATTATTTGACATTGATTCAGAAaggtcaaaaaaaaatttggacaaaacaAGAAGATCAGCAATTAATAGaattatacaataaatatgGAACGAATTGGGCAAAAATCAAACAAGAGTTTCCAACAGCCAGCAGAGCTCAATTAAGGTTACATCATTTGAGCCTTCAACGTGTTAAAGGAAATTTTAATCCTAAAACTGTAGAAAAGGATACTCCTATGCCaacatatataatttacaattccAAAACACCATGGTTGCGTGAAAATActgatatttttatgaatcatatgaaaattgatgatCAGCTAGTAAACTACTTTCGGAAAGAGAATAATTCcagaataaatgaaaaatcgaataaatcTGAAAAACTGAATATGAACGTTCGTAAGTTTCATGATGTTTTGACAAAGTTGAATGTACACATGCAAATACCTGAATATATTAACGAGGGAATAGAATTGGATAAAGAACATagatcattatttttatctttgcaAGAATATTTAGAAGTTAAAAAGATAAGCATTTCTGAAGAAGTAGAGAAATTAAGACTAAAAATGTTTGGTCCGAGAAAATTATTACTTGATCACGAGCGTTTTATACCACCTTTACCATTTGGACACTGTGTTtctaaagttaaaaaagctaaaaaatcaaattctttggattatttaaatgattcaAACAAATATCAGATAGAATTACCAATGGAAATAgaagatgataaaaatatatctgaATTCCTTGCAGAAGATATTATtcagtttgaaaaattcaaaaatatggTTACCACTAAAACAGGTGAATTTGAAGAATTGAAGAGCTGGTCTCCTGAACAATCTTTGCAAAAATTAGTACAATTTaaaaattttgaaacggATTCAGAAACTATAATGAAATATAGTTGGAAACAACACAAAATGGTACCTATCGCAGAATGTGAAGATCCTCATGAAGTGTTTGTGACTGAAAAAGAACCTCTTAAACTCATAAGGCCCAATAGAACTGCACTTCAAGCTTATCAAGAACTATTAGTGTCTTCGGAAAATTTTCCAACTGAAATGAGTTTGAATCATCCAAACCATAAATTGACATCTAATGGTCGTAATGCTTtgataatgttaaaaaaacgtTATCAACAGTTATTTGGTATCCCTATTGGTTTATCAAGAATTTTACCCCCAGACATCATAGATGAAAGTGCATTTTTACCAATTATTGagaaatttaagaaaaaaaatgtaaaaaaaaagtgttctAAGTTGTAA
Protein Sequence
MIKPEDSQSLLDEIQALEDALVAQGGSSPECNQKTFHQFHKNENEDMMDIDLYENESDYMDVDSVEKDNDEYQFDRNCNNLQDLLEMNKVLFESISTARQKMTKMLVDCQNKLHSIEGQIANQQTNVYHNKIICFNAGMPYFKDRNYFHPQRNEDTEKKIKNGELRLGKLQRIHKWNPADKSILLQSIKHEVNLKISKKQEMENMNGAITKTSQLPKDVKQAIGSLGNMKFDWLKICNMMPESKHNAEECEVMWNVFLHPDINKQRWTAQEDKNLNKIVDEHENEDWDRIARNLNTGRSGYQCFVRYNTNNWKNLMKGVLWSARDDTILLKLVEKLKMGDYIPWGYIASCMNNWTKQQVYFRWNYSLAPYLKKGRYTAEEDKLLLSAVNKYGKNFTQISALVMPHRTNIQLKEHYLTLIQKGQKKIWTKQEDQQLIELYNKYGTNWAKIKQEFPTASRAQLRLHHLSLQRVKGNFNPKTVEKDTPMPTYIIYNSKTPWLRENTDIFMNHMKIDDQLVNYFRKENNSRINEKSNKSEKLNMNVRKFHDVLTKLNVHMQIPEYINEGIELDKEHRSLFLSLQEYLEVKKISISEEVEKLRLKMFGPRKLLLDHERFIPPLPFGHCVSKVKKAKKSNSLDYLNDSNKYQIELPMEIEDDKNISEFLAEDIIQFEKFKNMVTTKTGEFEELKSWSPEQSLQKLVQFKNFETDSETIMKYSWKQHKMVPIAECEDPHEVFVTEKEPLKLIRPNRTALQAYQELLVSSENFPTEMSLNHPNHKLTSNGRNALIMLKKRYQQLFGIPIGLSRILPPDIIDESAFLPIIEKFKKKNVKKKCSKL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01484565;
90% Identity
iTF_01484565;
80% Identity
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