Tden000260.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Trichogramma dendrolimi
Gene Symbol
PRDM1
Assembly
GCA_034770305.1
Location
JAPMIB010000001.1:3088869-3092242[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 1.7e-06 6.3e-05 24.0 0.4 1 23 813 835 813 835 0.99
2 5 7e-05 0.0026 18.9 7.3 1 23 841 863 841 863 0.98
3 5 5e-06 0.00018 22.5 4.3 1 23 869 891 869 891 0.98
4 5 0.0031 0.12 13.7 1.5 1 23 897 919 897 919 0.97
5 5 0.00024 0.0089 17.2 0.2 1 22 925 946 925 946 0.96

Sequence Information

Coding Sequence
ATGAGGTCGTCGAGCGAAAACGACTTCATGGAGCTCAGCGAGATCGAGTTCCAGCAAAAGGTCAACTACATAGCGCCGGACACGCACACGGGGCCGGACGAGAAGAACCGCGCGGAGGCCTCGCTGCCGCGCAATCTCGTGCTCAAGCCGTCGCAGGAGGGCAACAACGCGCGCAACAACGTCTGCGGCGTCTGGAGCACCGATCGCATACCCAAGGGCACGCGCTTCGGCCCGCTGGTCGGACAGATACACCCCAAGGACGCGGTGCCACCCGACGCCGATCGCAAGTACTTTTGGAGGATATATCAAAATAACGAGCTATGCTACTACATCGACGGCTATGACGTGCAGAAAGCCAATTGGATGCGATACGTGAATCCGGCTTACTCGACAGAATCACAGAATCTCATCGCGTGCCAGTATGAGATGAACATTTACTTTTATACGGTGAGGGAAATCGAACCAAATCAAGAACTCCTGGTCTGGTATTGCCGTGACTTTGCCAAGAGGCTCAACCATCCGGAAACCGGCGAAGAGATGcttcaaaaaatatgtatgaaagcTCAGCAATCCGCGGCGGTGGTGGATAACGTGGCGATGAGTAACGAGGCAGGCGGCAGCGTGGCCGAGTCAtcctcgtcgacgtcgtcgccgCCCTCGGTGATTTACGATCAGCGGCGGGCGCGGCTCACACCACCGCAGGAGCGCCTCGCCGACGAGGGCTACCACTCGAATGGTTACCACGACGAGATCCTCACACCGCCCGAGGAGAGCAGCGAGTCCGACAGCGAGTCCAATTACGTGCTGGATTTCTCGAAAAAGCACCAAAGCAAAGTcgtcgcggcggcggctacctgcagcaccagcagcagcgtaaTAGCCAGTTCGGTCacgtcgcagcagcaacaacaacagcaacagcccgaacagcaacaacagcaatcACAGACCACCAGAGCGCAGCAAATCAATCATCACAATTTGCCGAAATTGAGCTCGGTCGTGAAACACGAGAACATGGCGCGTAACGATTACCGCAAGGTCAAGATCAAGATGTTCCGTACGTGCGGCAATTTCCAGacggcgagcagcagcacgtcgCCGCCGACTCCATCAACGACGACCAGCGGAAAAGTCGTCGTGGTCGAGGAGGCCAGCGAGGCGCTAAGACGCTCCCCGAGCCCTGTGGAATCCAGCAGCAGGCAGAattcgacgctgctgctggccgcgagctcgagcgaggaGGACAAGCCCATGCCGATGAGCCCCAAGCCGATGTACTACGAGGAGACCAATAAGTCGTCGCTGCGCTACGCTCCCGGCAATGCTGGAGTTTTCGAGGCTTCGAGCGAGCATCGGCAATaccaacagcaacaacagacCCCACCGCGTCCGGGAGCGTCGATCCTGGAGAACATACTGCTGAGAGGCTCCGACGCAGCctcgagcgcagcagcagcggcagcggcggcagttTGTCCACAGCAACAACACGTGATCGTGCAGAGCAGCAGCCAAGTACAACCACCGCAGGTCGACTCGGTCACACCGTCGCCGTCCAGCCCCACGGAGATGGCCTACTCGTACAAAAAGTCGCATCGTTACAGCAACATACTGCCCTGCTCGCCGGACTCGAGCAGTTCGAGCCAAGCTCAGTCGACCCAGGGCCCGCCCCAACAACACCACCAGCACCAGATGCCACCGCAGGTGTCCacccagcagcaacagcagcacccgcaacaactgcagcagcaacaacagccgCAACAACACCCAGTGATAAACGAAGTGCCGAGCAGTACGAGTGGCAACTCGCCGAGCTCGAGCGGTCAGGTCTTGCTGCAACTGACGAGGTCGGCCAGTCCGGGCTTGGCCCACTCGACCGAGGCCAAGTTCGCTCGTATGGACGACAGTCCACCGCCGCCCACGAGCAACGGAGGAGCGATTCACTACTCCTCCGAGGCTGGACCAATGTACATCAGCAACGGGGCTGGCGCTGGCATGTCGCCGAGACCCCAGCCAGCCTACAGTCCGGCCTACGGCATGTatcatcagcaacagcagcaacagcaacaggtCTACTCTCCTCCACCACCGCCCCCGACGATGGGTATGTACGAGGAGCAGCGCCGAGTGGGTCGCTGCGAGGCCACGACCACTTCGTCACCCGGTGGTGGTGGACAGCatcagcaccagcagcagcagctcgaggcCTCGGGACTGATCGCCAGCACTCGAGGTCTGCATCTGGGCTGCCTGAGCCCGTCGGCCAGGTACTCGCCCCCGGCGGGCAGCATGTCGCCGGACGAGCGCTGCGGCTCCTCCCAAAGCGTCGGCTCGCTCAGTCCCACGGGCTCGTCCCAGGGTGGCGGCGGGGGCTCCCGAGGCTATCGCTCCCTGCCCTATCCCCTCAAAAAGAAGGACGGCAAGATGCACTACGAGTGCAACGTCTGCGCCAAGACCTTCGGCCAGCTGTCGAATCTCAAGGTCCACCTGAGGACGCACTCGGGCGAGCGGCCCTTCAAGTGCCACGTCTGCACCAAGAGCTTCACCCAGCTTGCCCACCTGCAGAAGCACCACCTGGTGCACACGGGCGAGAAGCCCCACCAGTGCGACATCTGCAAGAAGCGCTTCAGCTCGACCTCGAACCTCAAGACCCACCTGAGGCTGCACTCGGGCCAGAAGCCCTACGCCTGCGACCTGTGCCCGGCCAAGTTCACCCAGTTCGTGCACCTCAAGCTGCACAAGCGGCTGCACACCAACGAGCGGCCCTACACGTGCCAGGTCTGCGACAAGAAGTACATAAGCGCCAGCGGCCTCAGGACCCACTGGAAGACCACCAGCTGTCGGCCGAGCAGCGTCGAGGACGAGCTGGCCCTCGGCTCGGGCTCGCCCAACCCCTACTACGACTACGGGCCCGACGTCAATGTCGTAGGTAACATGCCGACCACGTCGCTGCACAACCTCGAGAACAGCGTGGGTCGGCCGAGCGTCATCGAGACGTCGCAGCCTCACATAATCGAGTGCACATAG
Protein Sequence
MRSSSENDFMELSEIEFQQKVNYIAPDTHTGPDEKNRAEASLPRNLVLKPSQEGNNARNNVCGVWSTDRIPKGTRFGPLVGQIHPKDAVPPDADRKYFWRIYQNNELCYYIDGYDVQKANWMRYVNPAYSTESQNLIACQYEMNIYFYTVREIEPNQELLVWYCRDFAKRLNHPETGEEMLQKICMKAQQSAAVVDNVAMSNEAGGSVAESSSSTSSPPSVIYDQRRARLTPPQERLADEGYHSNGYHDEILTPPEESSESDSESNYVLDFSKKHQSKVVAAAATCSTSSSVIASSVTSQQQQQQQQPEQQQQQSQTTRAQQINHHNLPKLSSVVKHENMARNDYRKVKIKMFRTCGNFQTASSSTSPPTPSTTTSGKVVVVEEASEALRRSPSPVESSSRQNSTLLLAASSSEEDKPMPMSPKPMYYEETNKSSLRYAPGNAGVFEASSEHRQYQQQQQTPPRPGASILENILLRGSDAASSAAAAAAAAVCPQQQHVIVQSSSQVQPPQVDSVTPSPSSPTEMAYSYKKSHRYSNILPCSPDSSSSSQAQSTQGPPQQHHQHQMPPQVSTQQQQQHPQQLQQQQQPQQHPVINEVPSSTSGNSPSSSGQVLLQLTRSASPGLAHSTEAKFARMDDSPPPPTSNGGAIHYSSEAGPMYISNGAGAGMSPRPQPAYSPAYGMYHQQQQQQQQVYSPPPPPPTMGMYEEQRRVGRCEATTTSSPGGGGQHQHQQQQLEASGLIASTRGLHLGCLSPSARYSPPAGSMSPDERCGSSQSVGSLSPTGSSQGGGGGSRGYRSLPYPLKKKDGKMHYECNVCAKTFGQLSNLKVHLRTHSGERPFKCHVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPAKFTQFVHLKLHKRLHTNERPYTCQVCDKKYISASGLRTHWKTTSCRPSSVEDELALGSGSPNPYYDYGPDVNVVGNMPTTSLHNLENSVGRPSVIETSQPHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01484167;
90% Identity
iTF_01484167;
80% Identity
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