Tden007000.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000018.1:1909456-1912234[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.029 1.1 10.6 1.7 1 23 118 141 118 141 0.94 2 15 8.1 3e+02 3.0 3.3 2 23 308 330 308 330 0.96 3 15 1.8 67 5.0 6.9 2 23 354 376 353 376 0.96 4 15 0.095 3.5 9.0 2.0 2 23 424 446 424 446 0.95 5 15 6.2 2.3e+02 3.3 1.7 1 23 482 505 482 505 0.91 6 15 0.051 1.9 9.9 3.2 1 23 520 543 520 543 0.96 7 15 4.1 1.5e+02 3.9 3.5 1 23 553 576 553 576 0.95 8 15 0.65 24 6.4 1.8 1 23 625 648 625 648 0.96 9 15 0.046 1.7 10.0 2.0 1 23 664 687 664 687 0.95 10 15 7.7e-05 0.0028 18.8 1.6 1 23 693 716 693 716 0.95 11 15 0.011 0.39 12.0 1.0 3 23 723 744 721 744 0.93 12 15 0.0041 0.15 13.3 0.4 1 23 749 772 749 772 0.97 13 15 3.2e-07 1.2e-05 26.3 0.4 2 23 779 800 778 800 0.97 14 15 0.00013 0.0048 18.0 0.5 1 23 806 828 806 828 0.98 15 15 5.8e-06 0.00021 22.3 1.4 1 23 834 856 834 856 0.98
Sequence Information
- Coding Sequence
- ATGCCGTTATTTTACTCTAAAAAACGTAAATATGTCATTCAACACAGACACAATCATTTACGTAAGAGTACACAGATatCGACGCAGCAACAGCGCCAGCAGCCTAACCTAAGTAATTCGTCGCATAAAGTAGCCGCGAAGCTGCATCCTAAACAAATGGCGAAATTCGGGCATCCAGAGAGCATCAAGATCGAGCGAGTCGAGTCTCTGGCGCCACAGACCAAGTCCACGGTCGGCGGGGCCGATTTCGAGGAAGTCTATATCGACGGATCGGACATGATTGCCGAGTCGAACAACAAAACGACGAATCAACAACAATCGTCGACTCAGGAAACAAGTGAAATAGTCGTGTACATGTGCACCCCTTGCCAGACTTACTTCCCGACGAAGAGTCAACTGGAGGTGCATCACAAGGAGTCGCACCAGGCCACCAAGCCTGCCGTTAAAAAGGTCAAACTGCAGCAGCTTCTCATGCAGATcaagcaggagcagcagcccAAGCCGAGGCCGCGCTTCGATCAAGAAGAGAACAAAGTATTTTTCCAGCTTTATCATAAAGACTTGAATACCAACGAGTTCGTCTGTAATTTTTGTCCGTATCGATCAGTCATACGAACGACGGTCTCGTCGCACGCCAAGCGAAATCACATGTCAGCGGGTTCTGATAacgaggaggaagaagaatcCGAAGTGATTAAAACTAAGCAGGAGCAGGAGGAtgtcgaagaagaagaagatgaattATACGACGAAACGCTCGTGGATGAGATGAAAATGGAGGTGATGGACGAGGAGATGATGGCGATACACGACGTGGACGACGAGTCATCGTGGCCCATCGAAACCGTCGACGAGTCGTTCGAAGAGCAGATGCAGAATCACGAGCCGGAGGCAGTCTCCGACAGCGAGGATCGGATGCGCACCTGTCCCTACTGTTCGTTCCAATCGACGGTAACTTCGACCTATCACTCGCACGTAAAACGTAAACATCGCGAGGAATGGGCGGCCGAAAATGCAATGAAAGCCGCCATGGCCAAGACTCCCGAGGGCCCCGAGCTCCAGTGTCAACACTGTGACTTCACCACGTACAAGCGCAATACTCTGCACTCGCACGTCAAACGCAAACACGGACTCAAGCGCAAGCTCGACGAGACCGACTtggacgacgtcgacgacaacTTCGTAGAGGTCAAGGAAGAGATGCTCGACGAGTCCGAGGTCGCTTTGGCCGACGGCGCTGCCGAGTCCGACGTACAGTTGAAGATACGCTCGTGTCCGTACTGCAACTTTCAGACGCGCAACACGTCGACTTTCAACAGCCACGTGCTGCGCAAACACGGCAGCAACGCCAAGCGAAGCGCGTCCGGCCTCGGAGGGGCCTCGAGTCGCGCCGCCGCCAGCAAGAAGAGCAAGACGGCCTCCAACAGCTTCATGATCACCGGCTACGCGTGCCACTATTGCGCATTCGTCGCCGCCACGATACACAGCCTCACCAGTCACAACACGCGAATGCACGCGAGCATGAAGCAGCCCGTCCAGGAGATACCGACCGATCAGTTTGACTGCGACCGTTGCGAGTACAAAACGCGCAATCGGCGCAACATGCAAACTCACTTGAAAAAGAACCACAAAGGTCAAGCCAATGCCGATGGCATGTACTGCTGCAACGCCTGCTCCTACGAGACCATGTCGCACATGGGTCTGCAGAGGCACATGTCGATCAAGCACCAGAAACCGAATCTCACCAATAATGTGCCCTGCTATCAATGCGAGGTTTGCGAATTCAAGTGCctgaacataaaaattatggaTTGGCATCTCAAATCGCATTGCAGTGATAATCGCACCAAGGCCGAGGAATCCGGAATCATTTTCTTCTGCAACGACTGTGACTTCTCCACCTGGCTTAAGACCCTGTTGTTCTCGCATATACGTCGAAAACACAAGGACGGAGAGGGCAAGGACGAACAGGACGAAGGCGAGCCTCTTTTCGTGTGCGAGCAGTGCGATTACTCGACGAAAAATAAGCACGTCATGAAGGTTCACGTGATTCGTAAGCACACGGAAAACTACAGCCACGAGTGCGATATTTGCGGCAAAAAGTACAAAGTCAAAGCGGACCTGACGAATCACGTCAGGTTTAAGCATCGCGAACAGCCCATTATTTGCGACGTTTGTGGTAAAACTTGCCAGAATAGCAATTTGCTGTATCTGCATCAGAAGTTCGCCCATTACAAGCCGGAATTCGAGTGTCCGATTTGCCATCGGCGCATGGTCAGTCAGGCCAATCTCGACGACCACATACTAAAGCAGCACGAGCAGCGTGAGAACGTCGTCTGCGAGGAGTGCGGCAAGCAGTTCACGCGCGCCTCGAGGTTGAAGATTCACATGAGAACGCACACAGGCTTGAAACCGTATTCTTGTCAAGTATGCTTGAAGTCTTTTGCACGGAGGAACGGATTGCGGCAGCATCTGCTTATTCATACGGGCAAAAAACCATACAGCTGCGATTTGTGCGACAAATCCTTTACTCAGAAAACGGGCTTGATAAGCCACAGAAAGAGTCATCCTGGATCTCATCCGCCTTTACCGAGGGTCACTATTGATCACGTACTTTCAAATTTACTTGAAGAAAGACAGTAG
- Protein Sequence
- MPLFYSKKRKYVIQHRHNHLRKSTQISTQQQRQQPNLSNSSHKVAAKLHPKQMAKFGHPESIKIERVESLAPQTKSTVGGADFEEVYIDGSDMIAESNNKTTNQQQSSTQETSEIVVYMCTPCQTYFPTKSQLEVHHKESHQATKPAVKKVKLQQLLMQIKQEQQPKPRPRFDQEENKVFFQLYHKDLNTNEFVCNFCPYRSVIRTTVSSHAKRNHMSAGSDNEEEEESEVIKTKQEQEDVEEEEDELYDETLVDEMKMEVMDEEMMAIHDVDDESSWPIETVDESFEEQMQNHEPEAVSDSEDRMRTCPYCSFQSTVTSTYHSHVKRKHREEWAAENAMKAAMAKTPEGPELQCQHCDFTTYKRNTLHSHVKRKHGLKRKLDETDLDDVDDNFVEVKEEMLDESEVALADGAAESDVQLKIRSCPYCNFQTRNTSTFNSHVLRKHGSNAKRSASGLGGASSRAAASKKSKTASNSFMITGYACHYCAFVAATIHSLTSHNTRMHASMKQPVQEIPTDQFDCDRCEYKTRNRRNMQTHLKKNHKGQANADGMYCCNACSYETMSHMGLQRHMSIKHQKPNLTNNVPCYQCEVCEFKCLNIKIMDWHLKSHCSDNRTKAEESGIIFFCNDCDFSTWLKTLLFSHIRRKHKDGEGKDEQDEGEPLFVCEQCDYSTKNKHVMKVHVIRKHTENYSHECDICGKKYKVKADLTNHVRFKHREQPIICDVCGKTCQNSNLLYLHQKFAHYKPEFECPICHRRMVSQANLDDHILKQHEQRENVVCEECGKQFTRASRLKIHMRTHTGLKPYSCQVCLKSFARRNGLRQHLLIHTGKKPYSCDLCDKSFTQKTGLISHRKSHPGSHPPLPRVTIDHVLSNLLEERQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01484157;
- 90% Identity
- iTF_01484157;
- 80% Identity
- -