Tden001335.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000002.1:6112333-6113854[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.5e-05 0.00054 21.0 2.4 1 23 171 194 171 194 0.92 2 10 5.1e-06 0.00019 22.5 3.1 1 23 199 222 199 222 0.92 3 10 3.2e-05 0.0012 20.0 2.7 1 23 227 250 227 250 0.92 4 10 0.0032 0.12 13.7 2.6 1 23 255 278 255 278 0.91 5 10 0.0013 0.049 14.9 4.2 1 23 283 306 283 306 0.97 6 10 3.3e-05 0.0012 19.9 2.3 1 23 311 334 311 334 0.94 7 10 2.1e-05 0.00076 20.6 3.0 1 23 339 362 339 362 0.95 8 10 1.5e-05 0.00056 21.0 1.0 1 23 367 390 367 390 0.93 9 10 3.8e-05 0.0014 19.7 1.6 2 20 396 414 395 416 0.94 10 10 0.0001 0.0037 18.4 3.5 2 23 424 446 423 447 0.95
Sequence Information
- Coding Sequence
- ATGGATTCGAGCGGTGTATTCAGTTATCCTGTTAgAGTTAAGGAGGAACCCTGTGATATGTCGTtcgttgaaaatgaaaatgaaatgattgaCACGAAACCCGATATAAAAGACGTCCAATTATCGACATTTCTGCGAGAAAATTCAGCTGATGAGCTTCGAGAATGTGACCGAAATCGAGCAACTAAACTTGACGACGAAATTCAAATAGAATTTCAATGCAAAGACATGAAgccgaatatgagtttattcGCAGATAAGAAAATTGGCAATTATTCTGGATcatatttggaaaattttaaaaatatcgatgaaTATAAAACtgaaaacataatcaatttaaaaactgTGGAcggaatgaaaaaagaagtttcTGGCGACTTTGCCGAAAAATTGAGTTCGAATTCCAACTGTGACTTAAGCGagcaaaataagaaaagagctacgaaaaaaaggaatggCACACGTAGACTCAAGGCACACATCGATGCAATGCATAGTGTTATCACCCACACTTGTGATACGTGTGGAAAAACGTTTCAACACAAGCAAAATCTCAAAGCTCACATCGATGCGGTCCATAATGGTATCACCCACACTTGTGATACGTGTGGAAAAACGTTTAAACACAAGAAAAGTCTCAAAGCTCACATCGATGCGGTCCATAATGATAACACCCACACTTGTGATACGTGTGGAAAAACGTTTCAACACAAGAAAAGTCTCAAAGCTCACATCGATGCggtgcataatggtatcaccCACGCTTGTGGAACGTGTGGAAAAACGTTACAACACAAGAGACATCTCAAAGCTCACATCGATGCggtgcataatggtatcactCATACATGTTACATTTGCGGCAAGACAATCACATATAAGTGTAGTCTCAAAGACCACATCAAATCGGTGCACAATGGTATTagacatgcatgtgatatttgtaaaaagacattttcatcaaaaaggTATCTCAAACtccacatcgattcgatgCATAATGGTTCTAAacatacatgtgatatttgtaaaaagacattttcatcaaaaaattatctcaaactccacatcgattcgatgCATAATGGTTCTAAacatacatgtgatatttgtgaaaagacattcacacTGAAGGGTAATCTCAAAACCCACATTGATTTGGTACATAATGGTATCAAACAAAAATGTCGTATGTgtggaaaaacattttcacacaaAAGATCTCTTCAAGAGCACATCGATAGAGATAATTGTAGCAACAGAAATAAATGCGACAGAtgcggaaaaatatttacacagAAGAAACGTCTTCAAAACCATATGGATAAAGTGCATCACGCATTATGA
- Protein Sequence
- MDSSGVFSYPVRVKEEPCDMSFVENENEMIDTKPDIKDVQLSTFLRENSADELRECDRNRATKLDDEIQIEFQCKDMKPNMSLFADKKIGNYSGSYLENFKNIDEYKTENIINLKTVDGMKKEVSGDFAEKLSSNSNCDLSEQNKKRATKKRNGTRRLKAHIDAMHSVITHTCDTCGKTFQHKQNLKAHIDAVHNGITHTCDTCGKTFKHKKSLKAHIDAVHNDNTHTCDTCGKTFQHKKSLKAHIDAVHNGITHACGTCGKTLQHKRHLKAHIDAVHNGITHTCYICGKTITYKCSLKDHIKSVHNGIRHACDICKKTFSSKRYLKLHIDSMHNGSKHTCDICKKTFSSKNYLKLHIDSMHNGSKHTCDICEKTFTLKGNLKTHIDLVHNGIKQKCRMCGKTFSHKRSLQEHIDRDNCSNRNKCDRCGKIFTQKKRLQNHMDKVHHAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -