Tden003337.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000006.1:742432-743803[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.2e-05 0.00079 20.5 4.9 1 23 116 138 116 138 0.98 2 11 0.021 0.77 11.1 5.5 1 23 144 167 144 167 0.93 3 11 0.0068 0.25 12.6 0.1 1 23 173 196 173 196 0.94 4 11 0.00016 0.0058 17.8 0.4 1 23 202 225 202 225 0.94 5 11 0.01 0.37 12.1 2.5 1 23 231 254 231 254 0.95 6 11 0.00039 0.014 16.6 0.2 2 23 261 283 260 283 0.96 7 11 7.2e-06 0.00026 22.0 0.6 1 23 287 310 287 310 0.94 8 11 0.00027 0.0098 17.1 2.6 2 23 317 339 316 339 0.91 9 11 7.3e-05 0.0027 18.9 0.6 1 23 345 368 345 368 0.94 10 11 0.00026 0.0094 17.1 0.1 1 23 374 397 374 397 0.95 11 11 5e-05 0.0018 19.3 0.7 1 23 403 426 403 426 0.97
Sequence Information
- Coding Sequence
- ATGAGCTTTCAAAATCACATTGTAAGAGATGGTCATGTAAGATTTATCAATAATatgACTCAGAGCAGTGAATTTACAGAAAAGCAAGAAACATTTCAGGAGAAATTTGTAAACGATTCCGGAAGAAAAGATGTAATACCAGATCAAAAATTGGATAGTATATTAAAACCCCATGAATGTGATGAATTTTCCAGAACAATTGAGCAACTACGTACTTTTATTCAAGACATCGATGAAGTCCAAAAACAACTGCAGCCGTATGATCGTGATTCATGTAAAATGTCATTGAAGCAAAAGAGTAATTTAAGAGTACAAGGGAGTACGGAACACAATCAATCGAGGCCGCATAAATGTGATCGATGTACGAAAACATTTAAGCGAAAGGGTTCTCTGAAGCAGCATGTCAAAGTACACGATATACTGAAGCCCTTTCATTGTATTAAATGTCCGAAAACATTTATGCGAAAATGTTCCTTGGAGCAACATATCAACAAACAGCACAATCGACCCAAGCCCTTCAGGTGTGATTTATGTGGAATGGCCCTTGGATATAAGAAGACGCTCAGAAATCATATTGATTGGGTGCATAAACAACTGAGGCCGTATAAGTGtgatttatgtgaaaagtcaTTTGGATACGAGAAGACACTTAAGAATCACATCGATTGGGTGCATAAAAAACTGAAGCCGCATACGTGCGATTTATGCGAAAAGGCATTTGGATGTAAGAGCACActaaaaaatcacattaatTGGGTGCATAAACAACTGAACGGGATCAAGTGCGATCTATGTCCGAAAATATTTGGATTAAATTCGAATATGAAGCAGCATATCAATGTAAAACACAATCCACTCTTTAAGTGCGATATTTGTGACAAGTCATTTGGATATAAGAAGATGCTCAAGAATCACATTGATTGGGTGCATAAACAACTAAAGCCATGTAGGTGCGATTTGtgtgaaaaaacttttacgcGGAAGAGTCTTCTGTCAGTTCACTTTGATTCCGTCCATAACCAACTTAAACCTTATAAATGTGATCTGTGCGAAAAGGCATTTGGTTATAAAAAGTCGCTCAAAAATCACATTGATTGGATGCATAAACAATTGAAGAGGTATTCGTGTGCTATATGTGGAAATTCGTTTGGACGAAAAGGTCTCTTAACAATTCACAGGAACGCAGCGCACAATCAAATGAAACCATACAAGTGCGATTTGTGCGAAAAGgcatttgtatataaaaagccGCTCAAAAATCACATGGATTCGATGCATAAGCTACCGAATACCGATGGCGTATTAGTGTGA
- Protein Sequence
- MSFQNHIVRDGHVRFINNMTQSSEFTEKQETFQEKFVNDSGRKDVIPDQKLDSILKPHECDEFSRTIEQLRTFIQDIDEVQKQLQPYDRDSCKMSLKQKSNLRVQGSTEHNQSRPHKCDRCTKTFKRKGSLKQHVKVHDILKPFHCIKCPKTFMRKCSLEQHINKQHNRPKPFRCDLCGMALGYKKTLRNHIDWVHKQLRPYKCDLCEKSFGYEKTLKNHIDWVHKKLKPHTCDLCEKAFGCKSTLKNHINWVHKQLNGIKCDLCPKIFGLNSNMKQHINVKHNPLFKCDICDKSFGYKKMLKNHIDWVHKQLKPCRCDLCEKTFTRKSLLSVHFDSVHNQLKPYKCDLCEKAFGYKKSLKNHIDWMHKQLKRYSCAICGNSFGRKGLLTIHRNAAHNQMKPYKCDLCEKAFVYKKPLKNHMDSMHKLPNTDGVLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01485338;
- 90% Identity
- iTF_01485338;
- 80% Identity
- -