Tden017288.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000080.1:122882-124669[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.5e-06 5.5e-05 24.1 0.7 1 23 310 333 310 333 0.98 2 10 1.4e-06 5.2e-05 24.2 0.7 1 23 339 362 339 362 0.98 3 10 2.4e-05 0.00088 20.4 1.5 1 23 368 391 368 391 0.98 4 10 2.1e-06 7.9e-05 23.7 2.6 1 23 397 420 397 420 0.98 5 10 0.0004 0.015 16.5 1.6 1 23 426 449 426 449 0.97 6 10 4.1e-06 0.00015 22.8 1.6 1 23 455 478 455 478 0.96 7 10 2.1e-05 0.00078 20.5 0.3 1 23 484 507 484 507 0.96 8 10 6.6e-05 0.0024 19.0 2.5 1 23 513 536 513 536 0.95 9 10 1.3 46 5.5 0.1 9 23 550 565 542 565 0.89 10 10 0.0069 0.25 12.6 0.4 8 23 577 593 570 593 0.90
Sequence Information
- Coding Sequence
- ATGTGTACTCTTCCACCGTTAACAGAAACATCACATCAGGATGTAGGCGAACAAGTTCCATCCTCTGGACCAAATCCTTGTGAAGAGTCACAAAATGAAATCGACGATTTCGATCGGACTACATGTAATGAAGTTCTAAGTACCGAAGTGTATTATGAACTTGAGTCGCGTATGAATCTCGATCCACTGTTAACCAAACATCAAGATGTACAGGAGGATGTGGGTGAACAAATTTTGTCAACTGAACCATATCCTTGTGAAGAGTCACAAAATGAAATCGACGATTTCGATTGGACTACATTTAATGAAGTTCCAAGTACTGAAACGGATTGTGAACTTGAGTTGCATATGAACCTCGATCCACAGTTAACCAAACATCAAGATGTACAGGAGGATGTGGGTGAACAAATTTTGTCAACTGAACCATATCCTTGTGAAGAGTCACAAAATGAAATCGACGATTTCGATTGGactaaatttaatgaagttcCAAGTACAGAAGCGGATTGTGAACTTGAGTCATATATGGGCCTCGACCCATCGTTAATCGAACATCAAGATGTACAGGAGGATGTGGGTGAACAAATTTTGTCAACTGAACCATATCCTTGTGAAGAGTCACAAAATGAAATCGACGATTTCGATTGGactaaatttaatgaagttcCAAGTACAGAAGCGGATTGTGAACTTGAGTCATATATGGGCCTCGACCCATCGTTAATCGAACATCAGGATGTACAGAAGAATTTAGGCGAACAAGTTTTGGCGACTACGCCAAATCCTTGTGAAGAGTCACAAAATGAAATCGACGATTTCGATTGGACTACATTTAATGAAGTTCCAAGAACTGAAGTCAGTTGTGACCAAGAACAAAATAAGCACCATAAAACAGTTCAGAAAATGGTTCACAAAGGACAAAAGGACTACGAGTGCGACGTGtgtcagaaaaaaatctcgaggaAGAGCAACTTGATaaaacacataaaaacagttcacgtTAAACAAAGGGAATACGAGTGCGACTTGtgccagaaaaaattttcacaaacgggcaacttgaaaatacacataaaaacagttcacgataAACAATGGGAATACGAGTGCGACGTGTGTCAGAAAACATTCACATGGCAAAGCCATTTGAAAGTACACGTAAAAACCGTTCATGACAAACAAGAGGACTACGAATGCGACGTGTGTCAGAAAAGATTTACACAGCAAAGGCATTTGAAAGTACACGTAAAAACCGTTCATGACAAACAAAAGGACTACGAATGTGACGTGTGTCAGAAAAGATTTTCTCGGAAGAGCATTATGacgaaacacaaaaaaatagttcacgaTAAACGTAAGGACTACAAGTGTGACGAGTGTCACAAAGTATTTTCAGAGCAAGGCAACTTGAAACAACACAAGAGCGTAGTTCACGATAAACGAAAGGACTACGAGTGCGACGTGTGTCAGAAAACATTTGCAGAGCAAGGCAACTTGAAACAACACAAGAGCGTAGTTCACGATAAACGAAAGGACTACGAGTGCGACGTGtgtcaaaaaacattttcgagTAAGAGCTATACGAAGAGGCACAAGAAAGAAGTTCACGATAAACGAAAGGACTACGAGTGCGACGTGCGTCAgaacaaattttcaaagaagGGCTCTTTAAAGATACACATAAAAGCAGTTCATGAAGGACAAAGGTACGAGTGCGAATTGTCTGAGAAAACATTTTCACATCAGGGCAACTTGAGAAAACACCAAAAAGCAGTTCATAAATCGTAA
- Protein Sequence
- MCTLPPLTETSHQDVGEQVPSSGPNPCEESQNEIDDFDRTTCNEVLSTEVYYELESRMNLDPLLTKHQDVQEDVGEQILSTEPYPCEESQNEIDDFDWTTFNEVPSTETDCELELHMNLDPQLTKHQDVQEDVGEQILSTEPYPCEESQNEIDDFDWTKFNEVPSTEADCELESYMGLDPSLIEHQDVQEDVGEQILSTEPYPCEESQNEIDDFDWTKFNEVPSTEADCELESYMGLDPSLIEHQDVQKNLGEQVLATTPNPCEESQNEIDDFDWTTFNEVPRTEVSCDQEQNKHHKTVQKMVHKGQKDYECDVCQKKISRKSNLIKHIKTVHVKQREYECDLCQKKFSQTGNLKIHIKTVHDKQWEYECDVCQKTFTWQSHLKVHVKTVHDKQEDYECDVCQKRFTQQRHLKVHVKTVHDKQKDYECDVCQKRFSRKSIMTKHKKIVHDKRKDYKCDECHKVFSEQGNLKQHKSVVHDKRKDYECDVCQKTFAEQGNLKQHKSVVHDKRKDYECDVCQKTFSSKSYTKRHKKEVHDKRKDYECDVRQNKFSKKGSLKIHIKAVHEGQRYECELSEKTFSHQGNLRKHQKAVHKS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -