Tden012507.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000045.1:980738-981835[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0021 0.076 14.3 0.1 1 23 30 53 30 53 0.96 2 12 0.00026 0.0096 17.1 4.3 1 23 59 82 59 82 0.95 3 12 1.1e-05 0.00041 21.4 3.7 1 23 88 111 88 111 0.96 4 12 0.00041 0.015 16.5 2.8 1 23 117 140 117 140 0.96 5 12 0.0012 0.043 15.0 0.9 1 23 146 169 146 169 0.95 6 12 7e-05 0.0026 18.9 0.4 1 23 175 198 175 198 0.97 7 12 0.00022 0.008 17.3 2.9 1 23 204 227 204 227 0.96 8 12 4.4e-05 0.0016 19.5 3.6 1 23 233 256 233 256 0.98 9 12 6.1e-06 0.00023 22.2 0.4 1 23 262 285 262 285 0.97 10 12 1.5e-05 0.00056 21.0 1.8 1 23 291 314 291 314 0.97 11 12 2e-05 0.00073 20.6 0.6 1 23 320 343 320 343 0.97 12 12 0.25 9.1 7.7 0.4 1 16 349 364 349 365 0.89
Sequence Information
- Coding Sequence
- atgaataaaagtggaAAGAAATTCGAGGAGGTTGTCtcagaaaataattcaagtgaacagGACATTGTACTTtcagacacaaaaaaatacgtttgtgatatttgtcaggaggcatttacactggaatcaagcatgataacacaccgagacaaAATTCACAGTGAAAgaaaagatttcgcttgcgacaaatgcgagaagaaatttgagtttcgaagtcatttgagtagacaccaaacaTCGACACACAAAGGCcacaatgatttttcatgcgaccattgtgaaaagaaatttgtgaacaaatcaagtttattcacgcaccaaaaattggtacacaaagatcgcaaagattacacatgcaacaagtgcgagagaaaatttgaaaatacatcaactttactcaagcacaacaaaatattccacgaaatctttaaagattatttatgtgaaacgtgcgccaagagatttagGAATAAACTGGGTTTGCTCAGACACGTAAAAAAAGTCCACGgcggtcgcaaagattacgcttgcgataagtgcgagatgAAGTTcgggaaaaaatcaaatttgctcgTACACCAAAAAGTAGTTCATGAAGGTCATAAAAATCATGCATGCGATAGGTGCGAACAgaaatttagagaaaaatcgaaattgatcagacaccaaaagacagtccacgagggtcgcaaagatttcactTGCGACCAGTGCAGGAAAAACTTTCAACAAAAAGCTCATTTGATccaacaccaaaaaacagtacacgaaggtcgtaaagattatgcatgcgataagtgcgagaagaaatttggagaacaAAGTAATTTGATcaagcaccaaaaaatagttcacgaaggtcgtaaagactacgcatgcgacaaatgcgagaaaaaatttggacaaaatcCGCATTTGCTccgacaccaaaaaacagtacacgaaaattttagaaattttgcatgtgacacgtgcgagaggaaatttggagaaaaatcagaTCTGTTGAGACACCAAAGAACTGTACACAAAGATCACAAAGATTATCAATGCGACAAATGCAAGATggcatttggacaaaaaagggAATTTGTTTAG
- Protein Sequence
- MNKSGKKFEEVVSENNSSEQDIVLSDTKKYVCDICQEAFTLESSMITHRDKIHSERKDFACDKCEKKFEFRSHLSRHQTSTHKGHNDFSCDHCEKKFVNKSSLFTHQKLVHKDRKDYTCNKCERKFENTSTLLKHNKIFHEIFKDYLCETCAKRFRNKLGLLRHVKKVHGGRKDYACDKCEMKFGKKSNLLVHQKVVHEGHKNHACDRCEQKFREKSKLIRHQKTVHEGRKDFTCDQCRKNFQQKAHLIQHQKTVHEGRKDYACDKCEKKFGEQSNLIKHQKIVHEGRKDYACDKCEKKFGQNPHLLRHQKTVHENFRNFACDTCERKFGEKSDLLRHQRTVHKDHKDYQCDKCKMAFGQKREFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -