Tden000630.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000001.1:7422855-7424405[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.1e-05 0.00039 21.5 1.2 1 23 156 179 156 179 0.98 2 10 1.7 63 5.1 0.4 8 23 192 208 185 208 0.84 3 10 7.9e-06 0.00029 21.9 1.3 1 23 234 257 234 257 0.95 4 10 2.8e-05 0.001 20.1 4.9 1 23 263 286 263 286 0.98 5 10 4.3e-06 0.00016 22.7 4.1 1 23 292 315 292 315 0.98 6 10 5.9e-05 0.0022 19.1 0.1 1 23 321 344 321 344 0.93 7 10 4e-07 1.5e-05 26.0 0.7 1 23 350 373 350 373 0.98 8 10 5.8e-06 0.00021 22.3 2.6 1 23 379 402 379 402 0.98 9 10 0.00021 0.0078 17.4 6.2 1 23 408 431 408 431 0.97 10 10 7e-08 2.6e-06 28.3 2.0 1 23 437 460 437 460 0.97
Sequence Information
- Coding Sequence
- ATGGAAAGCAAAGAGGACACTGTTAgGGTAAAACAAGAGCCGTTTGATACTTGCACAGAAGCTGAtgattgtaattataatttggTGGACACttgcaaaatcaaaaactttgaCACATTCTCGTTTCATGAATCATTAacaaATAACACGAATGAGGTTATGGCATGGCGTCAGGAAaagttagatgaaaaaatattcattgatttAGAGTGCGAAGATGTTAAGGTAGAATTGAATTCTTTGTCTGCAAAAATTTGCAAGACTGAGTATCAAAATTATCCATCTattgtgaaaattgaaaagcaaTTCCAAATTGATAGCATTAATGATAAGTAtctgataattttgataaaaaaagattttgattATCATAATCATTgtcaatttcaaataaatccCCGATTGAAAATGGATGAACGTAAAAAGGCTAAtgtatttagaaaaaatactCAAACAAAATTGTCATACGAGTGCAAAATGTGTCAAAAAACTTACAAAGGAAAAGCTAGTTTAAATTCACATATCAATACGACACATAAGGACATTAGATTATACGAATGTGATGTGattcacaaatcatttggatgcAAGAATAATCTCAATAAACACATAAATTCTGTTCATGATTTTGAATATGACATTTGTAAAAAGTTATACAGCAAAGCTCATATAGATGCAGTACAAAATCTTATGAAACCATTTGTATGTGATATTTGCAACAAATCATTTGGGCAAAATTGTACCCTCAAAAggcacataaatgcagtacacaGTCTGagtaaacccttcgaatgtgagatatgtcacaaatcatttggccAAAAATGTACCCTCAAACGTCACGTTAATACATTACACGATCTTAGTAAACTCTTCGAATGTGAAAtctgtcacaaatcatttggtcAAAAATGCAACCTAAAATCTCACATCAATACtgtacataatcggagcaaaccttttgaatgtgacatttgtcaaaaatcatttggacaaaatatTACCCTCAAGAATCATATtgatgcagtacataatcgaagAAAACCCTAtcaatgtgatatttgtcaaaaatcatttggtcGCAAGgcgtacctaaaatctcacaTCAATACTGTACACAATCGCAGCAAACCTTtcgagtgtgagatttgtcaaaaatcattttcccGCAAAAGTGAACTCAAAtgtcacataaatacagtacataatcgcaGCAAATCtttctattgtaaaatttgccataaatcatttggacaaagaTCTCACGTAAAAACTCACAAAATGACAGTAcacgaacgaaaaaaactctttgaatgtgaaatttgccacaaatcatttggacaaaaaagtaacctcaaaCGACACATCAATTCAGTACACAATCGAAGAAAACTCTATAGGGTTATCCTATAG
- Protein Sequence
- MESKEDTVRVKQEPFDTCTEADDCNYNLVDTCKIKNFDTFSFHESLTNNTNEVMAWRQEKLDEKIFIDLECEDVKVELNSLSAKICKTEYQNYPSIVKIEKQFQIDSINDKYLIILIKKDFDYHNHCQFQINPRLKMDERKKANVFRKNTQTKLSYECKMCQKTYKGKASLNSHINTTHKDIRLYECDVIHKSFGCKNNLNKHINSVHDFEYDICKKLYSKAHIDAVQNLMKPFVCDICNKSFGQNCTLKRHINAVHSLSKPFECEICHKSFGQKCTLKRHVNTLHDLSKLFECEICHKSFGQKCNLKSHINTVHNRSKPFECDICQKSFGQNITLKNHIDAVHNRRKPYQCDICQKSFGRKAYLKSHINTVHNRSKPFECEICQKSFSRKSELKCHINTVHNRSKSFYCKICHKSFGQRSHVKTHKMTVHERKKLFECEICHKSFGQKSNLKRHINSVHNRRKLYRVIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -