Tden010668.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000036.1:633575-635146[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.5e-05 0.0027 18.8 3.7 1 23 160 183 160 184 0.95 2 11 1.4e-05 0.00053 21.1 1.1 1 23 188 211 188 211 0.94 3 11 1.4e-06 5e-05 24.3 1.6 1 23 216 239 216 239 0.96 4 11 0.00021 0.0076 17.4 0.7 1 23 244 267 244 267 0.91 5 11 5.3e-05 0.0019 19.3 0.9 1 23 272 295 272 295 0.95 6 11 0.00012 0.0045 18.1 1.1 1 23 300 323 300 323 0.91 7 11 4.4e-06 0.00016 22.7 0.4 1 23 329 352 329 352 0.94 8 11 4.5e-06 0.00017 22.6 0.4 1 23 357 380 357 380 0.93 9 11 0.074 2.7 9.4 0.6 7 23 391 408 385 408 0.86 10 11 0.0024 0.09 14.0 1.8 3 23 415 436 413 436 0.95 11 11 8e-05 0.0029 18.7 0.1 1 23 441 464 441 464 0.92
Sequence Information
- Coding Sequence
- ATGGAGCCAAGTGGTTTATACAGTGtcagagtgaaaaaagagcCCCGTGAAGAGTCATTCAACGAAAATGATTATGAATTATCATCGCCAGCTGCTGGAGATGTTCAATCCTTGAGGCTTCTGCGGGAAAATTCAacTCAAGCGCTTCGAAAATGTGacgaaaatcaagaaaatgaaCTTGACGACCTGCGAATCGAATTGGAATGTAGAGATCAGAAGCCTATTTTGAATTTGCCAGCAGTCAAAAAAATGGAGGATAATTCTCTGAATCACTCGCAAGGCATACAGTATAGATACGATCATCATACTCTTAATATGATTAAAGTAGAAACTGCAGgagtagtaaaaaaagaatctttCAACGAAGATCCAACAAATGAACTCAGCGAGCCAAACCAAAAaagaagagttgaaaaaaagttaatctATGAACGCGGAcgcaaaaaacacatcgactCGACACATGATCGTATCATCCACACTTGCGATACATGCGGGAAGACATATGCTTACAAAAATACTCTCAAAAGACACATCGATTCAGTGCATCACCAAATCACTCACGCATGCGCAATATGCAAAAAGACATACACACAAAAGGATAGTCTCAAAATTCATATGAATGCAATGCATAACGGTGTTATGCATACATGCGACACATGCGGAAAGAAATACACGACAAACGGTAATCTCCAAAAACACATAGAATcggtgcataataaaatcattcacgCATGCGCAATATGCAAAAAGACATTCAAATATAAAGTAGGTCTCAAAATGCATATGGATGCAATACATAATGGTGTTAAGCATACATGCGACACATGCGGAAATAAATTCTCGACAAAGGGTAGTCTCCAAATACACAtagattcggtgcataataaaatcattcacgCATGCGATTTATGCAAAAAGACATACACACAAAAAGTTAGTCTCAAAATTCATATGGATGCAATGCATAATGGTCTAAGAAAGTACAAATGTGATTTATGCGGAAAGAAATCCACGACAAACGGTAATCTCCAAAAACACATCGATTTggtgcataataaaatcatttacgCATGCGATATATGCAAAAAGACATACACACAAAAGGATAGTCTCAAAATTCATATGGATGCAATGCATTATGGTGTTAAGCATATATGCGATATAcgcggaaagaaattttcacgaaaGGACGGTCTTCGAATCCactttaataaaatacataatggTGTGACCTACGGATgtgatttttgtgaaaaaagataTACCAATCGATCTGGTTTACATAAACATGTCGAATCTTCACATAATGGTATCGAACATGCATGCAAGTTGTGCGGAAAGATATTCGGACGAAAAATTAATCTCGAAGCTCACCTAGGTGTGGCGCATCGCTCACATACAGCGACcgaataa
- Protein Sequence
- MEPSGLYSVRVKKEPREESFNENDYELSSPAAGDVQSLRLLRENSTQALRKCDENQENELDDLRIELECRDQKPILNLPAVKKMEDNSLNHSQGIQYRYDHHTLNMIKVETAGVVKKESFNEDPTNELSEPNQKRRVEKKLIYERGRKKHIDSTHDRIIHTCDTCGKTYAYKNTLKRHIDSVHHQITHACAICKKTYTQKDSLKIHMNAMHNGVMHTCDTCGKKYTTNGNLQKHIESVHNKIIHACAICKKTFKYKVGLKMHMDAIHNGVKHTCDTCGNKFSTKGSLQIHIDSVHNKIIHACDLCKKTYTQKVSLKIHMDAMHNGLRKYKCDLCGKKSTTNGNLQKHIDLVHNKIIYACDICKKTYTQKDSLKIHMDAMHYGVKHICDIRGKKFSRKDGLRIHFNKIHNGVTYGCDFCEKRYTNRSGLHKHVESSHNGIEHACKLCGKIFGRKINLEAHLGVAHRSHTATE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -