Tden025274.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000175.1:212534-214107[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00013 0.0047 18.1 0.6 1 23 169 192 169 192 0.91 2 11 1.5e-05 0.00056 21.0 1.5 1 23 197 220 197 220 0.94 3 11 0.0011 0.039 15.2 2.0 1 23 225 248 225 248 0.91 4 11 3.3e-05 0.0012 19.9 3.0 1 23 253 276 253 276 0.93 5 11 1.2e-06 4.5e-05 24.4 2.5 1 23 281 304 281 304 0.96 6 11 0.00021 0.0078 17.4 0.3 1 23 309 332 309 332 0.90 7 11 5.4e-06 0.0002 22.4 2.3 2 23 338 360 337 360 0.94 8 11 3.7e-07 1.3e-05 26.1 0.1 1 23 365 388 365 388 0.95 9 11 2.8e-05 0.001 20.1 1.5 1 23 393 416 393 416 0.94 10 11 0.00014 0.0052 17.9 0.9 1 23 421 444 421 444 0.96 11 11 0.00082 0.03 15.5 2.6 1 23 448 471 448 471 0.96
Sequence Information
- Coding Sequence
- ATGGACTCCAGTGGATTGTTTAATAATGCCATCagAATAAAGGAAGAACCTTACGACGATTCgtttgttgaaaatgataGTGAAATTACAGACGAGACGGCTGACATTAAAAATATCCAACTCTCGAGATTTCTTGgagaaaattcagTCCAAGTgcttaaaaaatgtaacgGTAATCTTAAGAGAGAGCTTGATGAAGTACAAATCGAATTAGAATGCGTAGACCAGAAGCCTTACGCGAACCTATtattaattaagaaaaacGACGATTACTCTCAAGGTAATTTGCGGAATATAAAGTTTAGTGATTATCATGAagctcaaaaatcgattaaagTAGAAACTCTGGGAGAAGTTAAAAGTGAATTTCTTGGCCATGTGGCAACAACATTGAATCTCGACTCTGGACTCGTTGagaaaaatagtgaaaaaagaCTTACCAATGCGGTTGACAATCAACGTAAATCCAAAACTAAAACAGATGTGGGGCGTAGTAAGTTCGATCACGTTTGTGACATATGCAATAAGGGATTTGCaaacaaatataatatgaaaattcatagTAATGCGGTGCACAAAGGTATCAAACATGCATGTGATTTGTGTGGCAAgacatttacacaaaaattttatctcaaattgcacatcgattcagtgcataatGATATCAAACATGCATGTGATTTGTGTGGCAAgacatttacacaaaaattttatctcaaattccacatcgattcagtgcataatGATATCAAACATGCATGTGATTTGTGTGGCAAgacatttacacaaaaatgttatctcaaaatccacatcaaTGCGATGCATAAAGGTATCACAcatacatgtgatatatgccaaaagaAATTCATCCAgaagagtaatctcaaaaccCACATGGATTCGGTACATAATGGTATCACatatgcatgtgatatatgcggaAATAAATTCAGAAGAAAACATGGACTCCAAATCCATGTCGATGCGATACACAATAGTGTCAAATGTACATGCGATACTTGCGGAAAatcattttcacgaaaaaattatcttaaaatccacatcgattccATACATAATCGTTTACGatatgcatgtgatatttgtggaaAGTCTTTTGCTCAACAAGGGCATCTCGAAGTTCACATCAAAGCtatgcacaatggtgtcacccACTCGTGTGATGTGTGCGGAAAGAAATACACAAGTAAGGAACGTCTCAGAAAACACATCAATGCAGTACATAGTGGTATTACTCACGCATGtgatttatgtgaaaaaatatataataacctATCTAGTCTGATAAGGCATGTCAAAACTTCGCATAATGTAATCCATAAATGCGAGACGTGCAGAAAGACATTCGGACACGGAAGAAATCTGAAAGCCCATATTGACATGGCGCATCGGTCGCGCACAATGACCcagtaa
- Protein Sequence
- MDSSGLFNNAIRIKEEPYDDSFVENDSEITDETADIKNIQLSRFLGENSVQVLKKCNGNLKRELDEVQIELECVDQKPYANLLLIKKNDDYSQGNLRNIKFSDYHEAQKSIKVETLGEVKSEFLGHVATTLNLDSGLVEKNSEKRLTNAVDNQRKSKTKTDVGRSKFDHVCDICNKGFANKYNMKIHSNAVHKGIKHACDLCGKTFTQKFYLKLHIDSVHNDIKHACDLCGKTFTQKFYLKFHIDSVHNDIKHACDLCGKTFTQKCYLKIHINAMHKGITHTCDICQKKFIQKSNLKTHMDSVHNGITYACDICGNKFRRKHGLQIHVDAIHNSVKCTCDTCGKSFSRKNYLKIHIDSIHNRLRYACDICGKSFAQQGHLEVHIKAMHNGVTHSCDVCGKKYTSKERLRKHINAVHSGITHACDLCEKIYNNLSSLIRHVKTSHNVIHKCETCRKTFGHGRNLKAHIDMAHRSRTMTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -