Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000002.1:6317373-6319373[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.033 1.2 10.5 0.0 5 23 14 33 13 33 0.95

2 14 1 37 5.8 0.5 1 11 39 49 39 53 0.88

3 14 6.3e-05 0.0023 19.1 2.3 1 23 59 82 59 82 0.97

4 14 2.8e-05 0.001 20.2 1.0 1 23 88 111 88 111 0.96

5 14 0.51 19 6.8 1.7 5 23 121 140 121 140 0.93

6 14 1.8e-05 0.00067 20.7 1.2 1 23 146 169 146 169 0.98

7 14 0.00027 0.0099 17.1 3.6 1 23 175 198 175 198 0.97

8 14 1.5e-06 5.6e-05 24.1 0.7 1 23 204 227 204 227 0.97

9 14 6.1e-05 0.0022 19.1 4.7 1 23 233 256 233 256 0.97

10 14 9.1e-06 0.00033 21.7 1.0 1 23 262 284 262 284 0.98

11 14 0.038 1.4 10.3 0.1 5 21 298 314 297 315 0.93

12 14 9.2e-05 0.0034 18.5 1.6 1 23 326 349 326 349 0.97

13 14 2.2e-06 8.1e-05 23.6 2.2 1 23 358 380 358 380 0.99

14 14 4.4e-05 0.0016 19.5 1.7 1 23 390 413 390 413 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.033	1.2	10.5	0.0	5	23	14	33	13	33	0.95
2	14	1	37	5.8	0.5	1	11	39	49	39	53	0.88
3	14	6.3e-05	0.0023	19.1	2.3	1	23	59	82	59	82	0.97
4	14	2.8e-05	0.001	20.2	1.0	1	23	88	111	88	111	0.96
5	14	0.51	19	6.8	1.7	5	23	121	140	121	140	0.93
6	14	1.8e-05	0.00067	20.7	1.2	1	23	146	169	146	169	0.98
7	14	0.00027	0.0099	17.1	3.6	1	23	175	198	175	198	0.97
8	14	1.5e-06	5.6e-05	24.1	0.7	1	23	204	227	204	227	0.97
9	14	6.1e-05	0.0022	19.1	4.7	1	23	233	256	233	256	0.97
10	14	9.1e-06	0.00033	21.7	1.0	1	23	262	284	262	284	0.98
11	14	0.038	1.4	10.3	0.1	5	21	298	314	297	315	0.93
12	14	9.2e-05	0.0034	18.5	1.6	1	23	326	349	326	349	0.97
13	14	2.2e-06	8.1e-05	23.6	2.2	1	23	358	380	358	380	0.99
14	14	4.4e-05	0.0016	19.5	1.7	1	23	390	413	390	413	0.96

Sequence Information

Coding Sequence: ATGGATATTAGTAAGGAAAAATCCAAAGTAGTTtctgatatttgtcaggagccATTTACACAGGAAGGAAGCATGACAAGACATCGAAATGTAGTTCACAATGAACAAAACAATTACGCATGCGTCAAGTGTGACAAGAAATTTAAGTTGCGAAttcacgaaggtcgcaaagattttgcatgcgacaaatgcgaaaagaaatttggaacaaAACAGCATTTGCTAATCCACCAAAAGActgtccatgaaggtcgcaaggattacgcatgtgataactgcgaaaagaaatttggacataaatctACTTTGATCAGGCACCAAGAGATAGTTCATGAAAATCAGAATAATTTCGCATACATTAAGTGTGAAAAGAagattggagaaaaatcgaaattgacaAGACATCATAGAACAGATcacgaaggtcagaaagattacccatgtgacaagtgcgagaagaaatttgaagaaaaattaaatttgactaagcatcaaaagacagtccatgaaggagacaaagattatgcatgcgacaagtgtgaaaagaaatttacacaaaaagatAATTTGCTCTGCCATCGAAGAACGGTTCACGATGGTCGCAACGATTACGCATGTGgtaagtgtgagaagaaattcgggaATCAAAGCAATTTGAGAAAACATCAAATAACAGTTCatgaaaatcgcaaaaatttcgcatgcgacaagtgcgagaagaaatttggacataaacacAGCTTGCGCatccaccaaaggacagtgcACGAAGATCacaaagattttacatgcgacaactgcgaaaagaaattcggacgcAAATCAAGCTTGATTTTACACCTGAAAATTCACGAAACTGTAATTGAAAGTGTCGAAGATTACGCAATcgacaagtgcgagcagaaatttgttgattcgaaaaatttgatcaaCCACCAAAAGGCAAGATCTATCAAAAGAAATGATAGCGTCGATTTTGCATGCCACAATTGCGACCAGAAATTTgaactgaaaataaatttgatcaGACACCTAAAAACAGTGCACAAAGACCGCGAAGATCACGAAGATTAtcaatgcgacaagtgcaaaaagaaattcggacgcAAATCTAGCTTGATCTCACACCTGAAGATACACGAAACTGTCAAGGAAGGTCATACAGATTATTCATGCCACAAGTGCGAGCAGACATTCAGGGCTCAAAGCGATTTGATGAGGCATCGAGAAATAGTCCACGAATGCCGCAGAGATGACGCGAGCAACGAGAGCAACAAAAAGAAATCCAGGCCTCGATCGAATTGGAGCAGGTCCCGAAAATCAGTGCAGAAAATTAACAGAGACAAGCATTTAGATCGGTGCTATAACTGTTTAGTTTGCCGGTACAATCGATCATTGTCCAAAAAAAAGCTGgcgcaaaaacaaaaaaagctcgtgacTAGTAATTATTGA
Protein Sequence: MDISKEKSKVVSDICQEPFTQEGSMTRHRNVVHNEQNNYACVKCDKKFKLRIHEGRKDFACDKCEKKFGTKQHLLIHQKTVHEGRKDYACDNCEKKFGHKSTLIRHQEIVHENQNNFAYIKCEKKIGEKSKLTRHHRTDHEGQKDYPCDKCEKKFEEKLNLTKHQKTVHEGDKDYACDKCEKKFTQKDNLLCHRRTVHDGRNDYACGKCEKKFGNQSNLRKHQITVHENRKNFACDKCEKKFGHKHSLRIHQRTVHEDHKDFTCDNCEKKFGRKSSLILHLKIHETVIESVEDYAIDKCEQKFVDSKNLINHQKARSIKRNDSVDFACHNCDQKFELKINLIRHLKTVHKDREDHEDYQCDKCKKKFGRKSSLISHLKIHETVKEGHTDYSCHKCEQTFRAQSDLMRHREIVHECRRDDASNESNKKKSRPRSNWSRSRKSVQKINRDKHLDRCYNCLVCRYNRSLSKKKLAQKQKKLVTSNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -