Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000002.1:6479286-6481123[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.038 1.4 10.3 0.2 5 23 194 213 193 213 0.95

2 13 0.097 3.6 9.0 7.7 1 23 219 242 219 242 0.95

3 13 0.00027 0.0098 17.1 1.1 1 23 248 271 248 271 0.96

4 13 4.6e-06 0.00017 22.6 0.7 1 23 277 300 277 300 0.95

5 13 5.8e-05 0.0021 19.1 0.3 1 23 306 329 306 329 0.97

6 13 4e-06 0.00015 22.8 0.3 1 23 335 358 335 358 0.98

7 13 0.00045 0.017 16.4 2.5 1 23 364 387 364 387 0.96

8 13 0.00052 0.019 16.2 2.5 1 23 393 416 393 416 0.96

9 13 7.6e-06 0.00028 21.9 1.7 1 23 422 445 422 445 0.96

10 13 0.0003 0.011 16.9 0.4 1 23 451 474 451 474 0.95

11 13 0.00094 0.035 15.3 1.1 1 23 480 503 480 503 0.95

12 13 1.7e-05 0.00064 20.8 2.4 1 23 509 532 509 532 0.97

13 13 9.5e-06 0.00035 21.6 3.0 1 23 538 561 538 561 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.038	1.4	10.3	0.2	5	23	194	213	193	213	0.95
2	13	0.097	3.6	9.0	7.7	1	23	219	242	219	242	0.95
3	13	0.00027	0.0098	17.1	1.1	1	23	248	271	248	271	0.96
4	13	4.6e-06	0.00017	22.6	0.7	1	23	277	300	277	300	0.95
5	13	5.8e-05	0.0021	19.1	0.3	1	23	306	329	306	329	0.97
6	13	4e-06	0.00015	22.8	0.3	1	23	335	358	335	358	0.98
7	13	0.00045	0.017	16.4	2.5	1	23	364	387	364	387	0.96
8	13	0.00052	0.019	16.2	2.5	1	23	393	416	393	416	0.96
9	13	7.6e-06	0.00028	21.9	1.7	1	23	422	445	422	445	0.96
10	13	0.0003	0.011	16.9	0.4	1	23	451	474	451	474	0.95
11	13	0.00094	0.035	15.3	1.1	1	23	480	503	480	503	0.95
12	13	1.7e-05	0.00064	20.8	2.4	1	23	509	532	509	532	0.97
13	13	9.5e-06	0.00035	21.6	3.0	1	23	538	561	538	561	0.96

Sequence Information

Coding Sequence: ATGGAAAACGGCAGTGACGTAGTTAGGATTAAAGAAGAACAGAGCGATATTTTGACGACTGCAGGCGACGATTATGCTTTCGATTCAGGGGAATCTTGCAAAGCCAAAAACTTGGGAACATTTCGGTTTTATGAATCATCTacaaATTTAATGGAGTTGGAGTGCAAGAAGGTTAGAGATGCTAAAACTGAAGTGACATCTTTATCTGCAGCAACTTGCAAATCTGAGTATCAAAGTAATCCACCGattgtgaaaatagaaaacgaaAATCCGACCAATgacataaatgaaaatatattgattgattttgagtgcaaGTATGAGAAACCCGAGTTGAAGTCTTTATCGACAAACGTCTGCAAATCTGAGTGTGAAAGTGGTCTACCTACCATGAAAACAGAAAACAAAATTGAGACTAACTAttggaatgaaaaaagtttaataattttgataaaaaaagaatttgattataataataattgtcaaTTTCCGGAAAAATTACGATTGAAACTTGACAAATCTGATGCAATACAAGTTTTCGATAAAAGAACTCCAACcaaattatacaaaaagtatgatttttgtgaaaaaacgTATGAGGGAAAGGTGAGTCTGAAAAGACATGTTAATACGACACACAAGAGAACTAGACGATATGAATGTataatttgtcacaaatcatttggataccatTGTCACCTTAAAACTCATAtaaattcagtacataatcgaaTCAAACAGTTCGAGTGTGATATATGTCACACATTATTTGGACGAAAAGATTACCTtaaaactcacataaatgaAGTACACAATcgaagcaaacccttcgagtgtggcatttgtcacaagtcatttggacaaaaacaaaacctcaaaattcacataaatgcagtacatgatcgtatcaagtcctttgaatgtgacatttgcctCAAAAAGTTTGGATACAAGAAAAACCTCATTCAAcacataaatgtagtacataatcggaggaaacccttcgaatgtgatatttgtcagaaatcatttggataccaaAACTTACTCGAAAAGCACATAAATACCGTACACGATCTTcgcaaacccttcgagtgtggcacgtgtcacaaattatttaaagtaaAGGGTAACTTCAAAAGGCACTTAAATGAAATACATGTTCGtatcaaacccttcgagtgtggcacgtgtcacaaattatttagAGAAAAGGGTAACTTCAAAAGGCACTTAAATGAAGTACATGTTCGTATCAAACCCTTCGTGTGTGAcaattgtcacaaatcatttggacgaaaagatAACCTTAATACTCACGTCAGTTCAGTACATTACCTTGTCAAAacctttgaatgtgacatttgtcagaaatcatttggatacaaaaacGTACTCGAAAAGCACATAACTAACGTACACGATCTTCgaaaacccttcgaatgtgacatttgtcagaaatcattttcattaaagGGTAACCACAATAAACACATAAATGCTGTACATGATCGAAACAATTCATTCAGATGTGAtctttgtcacaaatcatttggattccAGACTAATCTTAAAACGCACATAAATGTTGTACATTTATGTGTCAAACCTTTTGAGTGTggcatttgtcacaaatcatttggacaaaaaagtcatCTAAATACTCATGTATTAAAGATACATAATCAAAGCAAACCTTAG
Protein Sequence: MENGSDVVRIKEEQSDILTTAGDDYAFDSGESCKAKNLGTFRFYESSTNLMELECKKVRDAKTEVTSLSAATCKSEYQSNPPIVKIENENPTNDINENILIDFECKYEKPELKSLSTNVCKSECESGLPTMKTENKIETNYWNEKSLIILIKKEFDYNNNCQFPEKLRLKLDKSDAIQVFDKRTPTKLYKKYDFCEKTYEGKVSLKRHVNTTHKRTRRYECIICHKSFGYHCHLKTHINSVHNRIKQFECDICHTLFGRKDYLKTHINEVHNRSKPFECGICHKSFGQKQNLKIHINAVHDRIKSFECDICLKKFGYKKNLIQHINVVHNRRKPFECDICQKSFGYQNLLEKHINTVHDLRKPFECGTCHKLFKVKGNFKRHLNEIHVRIKPFECGTCHKLFREKGNFKRHLNEVHVRIKPFVCDNCHKSFGRKDNLNTHVSSVHYLVKTFECDICQKSFGYKNVLEKHITNVHDLRKPFECDICQKSFSLKGNHNKHINAVHDRNNSFRCDLCHKSFGFQTNLKTHINVVHLCVKPFECGICHKSFGQKSHLNTHVLKIHNQSKP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -