Tden016591.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000075.1:355372-356784[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0019 0.07 14.4 0.1 1 23 30 53 30 53 0.97 2 14 0.00044 0.016 16.4 1.9 3 23 61 82 60 82 0.96 3 14 0.00051 0.019 16.2 1.7 1 23 88 111 88 111 0.95 4 14 2.6e-05 0.00095 20.3 2.8 1 23 117 140 117 140 0.96 5 14 0.0012 0.044 15.0 2.0 1 23 146 169 146 169 0.96 6 14 0.023 0.86 11.0 0.3 1 23 175 198 175 198 0.95 7 14 0.0052 0.19 13.0 2.7 3 23 235 256 233 256 0.96 8 14 2.7e-05 0.00098 20.2 0.7 3 23 264 285 263 285 0.97 9 14 5.9e-05 0.0021 19.1 1.3 1 23 291 314 291 314 0.98 10 14 1.9e-05 0.00071 20.7 4.9 1 23 320 343 320 343 0.98 11 14 4.4e-06 0.00016 22.7 0.6 1 23 349 372 349 372 0.96 12 14 0.00024 0.0089 17.2 0.5 1 23 378 401 378 401 0.97 13 14 8.9e-05 0.0033 18.6 0.6 1 23 407 430 407 430 0.97 14 14 0.0005 0.018 16.2 5.2 1 23 436 459 436 459 0.97
Sequence Information
- Coding Sequence
- atggacaaaaataaaaagaaatcgGAAGAAGTTGTGTCTGaagataatttgaataaacatGACATTGTTGTTCCAggcgacaaaaaatacatttgtgatatttgtcaggaggcatttacactagaatcaagtatgataacaCATCGAGagacaattcacaatgaacgaaaagataatgcatgcgacaagtgcgacatgaaatttgaatttagaagtcatttgagtagacatcaaatatcGGTACACAAGGGctgcaaaaattttgcatgcgacagatgcgagaaaaaatttgtgaaaaaatcgagattgttgaagcaccaaaaattagtacacaaagatcgtgaaaattactcttgtaacaaatgcgagagaaaatttgaaaataaatcaaatttactcagGCACAATAAGATATTccatgaagttttcaaagattacttatgtgaaaaatgcgccaagagatttggaaataaacagagtttgcatttgcacataaagacagtccacgagggtcccaaagattttgcatgcaacaagtgcgaagaGACATTCgggaaaaaagttgatttaatCTTCCACCAGAAGATAGTCCACGAAGATCggaaagattacttatgtgacaatagcgggaaaaaatttggatttaaaaaGACTTTACTCATACAGATGAAGACTTACCACGAGGAACTGAAAGATTTGGCATGCGAAAATTGTGAGAGGAAATGTTTTAGTAAAACAGATTTGTtgaaacaccaaaaaacagtccatgaaggacGTAAAGATAACCCATGCGACAGGTGCGAgcgaaaatttggaaataaatcggatttgatcagacaccaaaagacagtccacgaaggtcgaaaagattactcgtgtgacaagtgcgagcaaaaatttggagaaaaatcaaaattgattagacatcaaaaaacagtccacgaaggtcgaaaagatttcccATGCAacgaatgcgagaaaaaatttaaacataaacAGCATTTGCTCatccaccaaaaaacagtccacgaaggtcgaaaggattacgcatgcgacaaatgcgataaaaaatttggacgaaaatcggaCTTGTTAAATCATCGAAgggcagtacacgaaggttgcaaaaattacgcatgcgacgaatgcgagaaaaaatttggatataaatttcttttgcTAAAtcaccaaaagatagtacatgaaaatcggaaagattacgcatgcgacaagtgcggtAAGAAATATGGACTAAAATATAGCTTACTTTTGCATCAAAGgacaatccatgaaggtcggaaagattacgcatgcgacaagtgcgagaaaaaattcggatttaaacatcatttgctcaaccaccaaaagacaattcATGTGGGTCGTAATGATTACGcatgcgagaagaaataa
- Protein Sequence
- MDKNKKKSEEVVSEDNLNKHDIVVPGDKKYICDICQEAFTLESSMITHRETIHNERKDNACDKCDMKFEFRSHLSRHQISVHKGCKNFACDRCEKKFVKKSRLLKHQKLVHKDRENYSCNKCERKFENKSNLLRHNKIFHEVFKDYLCEKCAKRFGNKQSLHLHIKTVHEGPKDFACNKCEETFGKKVDLIFHQKIVHEDRKDYLCDNSGKKFGFKKTLLIQMKTYHEELKDLACENCERKCFSKTDLLKHQKTVHEGRKDNPCDRCERKFGNKSDLIRHQKTVHEGRKDYSCDKCEQKFGEKSKLIRHQKTVHEGRKDFPCNECEKKFKHKQHLLIHQKTVHEGRKDYACDKCDKKFGRKSDLLNHRRAVHEGCKNYACDECEKKFGYKFLLLNHQKIVHENRKDYACDKCGKKYGLKYSLLLHQRTIHEGRKDYACDKCEKKFGFKHHLLNHQKTIHVGRNDYACEKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -