Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000198.1:51092-52966[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 3.9e-06 0.00014 22.9 1.6 2 23 244 266 243 266 0.94

2 11 0.00082 0.03 15.5 0.7 2 23 272 294 271 294 0.94

3 11 1.4e-06 5e-05 24.3 0.4 1 23 300 323 300 323 0.96

4 11 2.8e-06 0.0001 23.3 1.5 1 23 329 352 329 352 0.97

5 11 1.6e-07 6e-06 27.2 1.5 1 23 358 381 358 382 0.97

6 11 3.6e-06 0.00013 23.0 0.9 1 23 387 410 387 410 0.97

7 11 0.00021 0.0076 17.4 0.3 1 23 416 439 416 439 0.95

8 11 9.2e-05 0.0034 18.5 0.8 1 23 445 468 445 468 0.96

9 11 0.00056 0.02 16.1 1.6 1 23 474 497 474 497 0.98

10 11 3.6e-05 0.0013 19.8 1.3 1 23 503 526 503 526 0.96

11 11 2.8e-05 0.001 20.2 1.8 1 23 531 554 531 554 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	3.9e-06	0.00014	22.9	1.6	2	23	244	266	243	266	0.94
2	11	0.00082	0.03	15.5	0.7	2	23	272	294	271	294	0.94
3	11	1.4e-06	5e-05	24.3	0.4	1	23	300	323	300	323	0.96
4	11	2.8e-06	0.0001	23.3	1.5	1	23	329	352	329	352	0.97
5	11	1.6e-07	6e-06	27.2	1.5	1	23	358	381	358	382	0.97
6	11	3.6e-06	0.00013	23.0	0.9	1	23	387	410	387	410	0.97
7	11	0.00021	0.0076	17.4	0.3	1	23	416	439	416	439	0.95
8	11	9.2e-05	0.0034	18.5	0.8	1	23	445	468	445	468	0.96
9	11	0.00056	0.02	16.1	1.6	1	23	474	497	474	497	0.98
10	11	3.6e-05	0.0013	19.8	1.3	1	23	503	526	503	526	0.96
11	11	2.8e-05	0.001	20.2	1.8	1	23	531	554	531	554	0.95

Sequence Information

Coding Sequence: ATGGAAAGCAGAAAGGATTTAGTTAGTGTTAAAGAGGAGCCTCATGACAGTTGGGAAGATGTAGCCGACGTGAGTATCGATCCGGGGTTCTTGGTGAAAACTGAAAACTCTGATGAATCATCGGCACATCCCACCAATGACTGTATTTCGTCGCAGCAGAAGACAGATGAGGATATTTTTATAGATTGCGAGAGCGTATTGGTAAAACAGGAACATAAGCAGTCATCGACGAACATCTGCCAAGCTACTGTAAAGGAAGAAAATCCAACAAATGACTTGAATGGGAAAAGgcttacaattttaattaaaaaaggatTCGATTACGAGAAGAACCGTCAATTTACCATTGGAGAAGAATCGAGTTTAACAAGACAAATAGAAACGATGAATAAGGACGATGGATCACGTGaattagaaattttcaaagccGAAAACTCTGAAGAATCATCGTCGAATGAATCATCGgcaaATCCCACCAATGACTGTATTTCGTCGCAGCAGAAGACAGATGAGGATATTTTTATAGATTGCGAGAGCGTATTGGTAAAACCGGAAGATAAGCCCTCATTGACTGTAAAGGAAGAAAATCCAACAAATGACTTGAATGGGAAAaggcttaaaattttaattaaaaaaggatTCAATTACGATAGTAATCGTCAATTTACCAAAGAAGAAGCGACTTCAACGAGACAAATGAAAACGACCCACAAGGGCATGGGACCACTTGAATGTGATagttgtcataaatcatttagTAACCCGAGTAATCTTAAAAACCACGTTAAGCAAGTACATAAGAACAAACCCTTACcgtgtgaaatttgtcacgaATCATTTTTCCTCCAAAGATATCTGCGTACTCACAtgaatgcagtacataatcagagcaaacccttcaaatgtgtgatttgtgacaaatcatttggatacaagagTGACCTTAATAAACACAtcaatgcagtacataatcagagcaaacccttcaaatgtgagatttgtcacaaatcatttggacaaaaaggtaCGCTTAAGGCTCACAGAAATGTAGTACATAAGAGAAGCAAACCCTTCAAATGTAAGATTTGTCCCAAGTCATTTGGACGGAAGGGAAATCTCAATATTCACATGAACTCAGTACATCACCAGAGCATACCTTttgagtgtgatatttgtcaaaaatcatttaaactAAAACAGaacctcaaaactcacatcgatACGGTACATAATCGAAGTAAATCCTttgagtgtgatatttgtcagaactcatttggacaaaaaattcaCCTCACAGCTCACATACAGGCAGTACATCTTGGGAGGAaatcctttgaatgtgatatttgtcaaaaattatttgtactaAAAAGTAATCTTACATCTCACATCCATATAGTACATATGAAAAGCAAACCTTACAAGTGTGctttttgttataaatcatttggatacaaaatCAACTTCGAAATGCATATGAGTACAGTACATATGAGTAGCAAACCTttcgagtgtgatatttgtcacaaatcatttggataccagaGTGTACTCAAAGTTCACATAAAATTAACTCATAGACggagaaaatttgaatgtaAGACTTGTCACAAGTCATTTAGTGGCAAGAATTATCTCGAAAATCACATTAATGCAGTACATATGGAAAGCAAATCTTag
Protein Sequence: MESRKDLVSVKEEPHDSWEDVADVSIDPGFLVKTENSDESSAHPTNDCISSQQKTDEDIFIDCESVLVKQEHKQSSTNICQATVKEENPTNDLNGKRLTILIKKGFDYEKNRQFTIGEESSLTRQIETMNKDDGSRELEIFKAENSEESSSNESSANPTNDCISSQQKTDEDIFIDCESVLVKPEDKPSLTVKEENPTNDLNGKRLKILIKKGFNYDSNRQFTKEEATSTRQMKTTHKGMGPLECDSCHKSFSNPSNLKNHVKQVHKNKPLPCEICHESFFLQRYLRTHMNAVHNQSKPFKCVICDKSFGYKSDLNKHINAVHNQSKPFKCEICHKSFGQKGTLKAHRNVVHKRSKPFKCKICPKSFGRKGNLNIHMNSVHHQSIPFECDICQKSFKLKQNLKTHIDTVHNRSKSFECDICQNSFGQKIHLTAHIQAVHLGRKSFECDICQKLFVLKSNLTSHIHIVHMKSKPYKCAFCYKSFGYKINFEMHMSTVHMSSKPFECDICHKSFGYQSVLKVHIKLTHRRRKFECKTCHKSFSGKNYLENHINAVHMESKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -