Tden012604.3
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000046.1:524059-525966[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.5e-05 0.0024 19.0 2.6 1 23 173 196 173 196 0.96 2 14 1.1e-06 3.9e-05 24.6 2.5 2 23 203 225 203 225 0.97 3 14 0.0045 0.16 13.2 1.5 1 23 231 254 231 254 0.94 4 14 4.2e-05 0.0016 19.6 1.8 1 23 260 283 260 283 0.97 5 14 1.4e-06 5e-05 24.3 0.4 1 23 289 312 289 312 0.98 6 14 8.4e-05 0.0031 18.7 1.8 2 23 319 341 318 341 0.95 7 14 8.9e-05 0.0033 18.6 0.7 1 23 347 370 347 370 0.96 8 14 5.2e-05 0.0019 19.3 0.8 2 23 377 399 377 399 0.96 9 14 0.0024 0.087 14.1 2.7 1 23 405 428 405 428 0.98 10 14 1.5e-05 0.00054 21.0 2.7 1 21 434 454 434 455 0.96 11 14 0.0013 0.046 14.9 3.7 1 23 468 491 468 491 0.97 12 14 4.7e-05 0.0017 19.4 0.2 1 23 497 520 497 520 0.96 13 14 0.0014 0.052 14.8 5.5 1 23 526 549 526 549 0.92 14 14 3.9e-05 0.0014 19.7 3.2 1 23 555 578 555 578 0.98
Sequence Information
- Coding Sequence
- ATGCAAAGCAACGTCGACGTAGTTagGGTGAAGGAGGAGCCGAGCGATACTTTGACGAACGCGAGTGACGATCACGTTTCCGATTTGGTGGGCTACTGTAAAGTCGAAAACTGTGAAACATCGGACATGCATAAGAGTGAGGCTGAGGTGTTACAAGAGAGGTTAGATGAAAAACCGATTATTGAATTTGAGTGCAAAAATGTTGAACCTGAACTGACGTCTCCACCGATAACCATCTGCAAATCCGAGGATCAAACATTTCAACATACCGTTAAGATAGAAAACAACAATCCAATAACTTGcaggaatgaaaaaattctaaaaattttgatcaaaaAAGGATTTAATTATGATGATAATTGTCAATTCGATGTGAGCTACCATTTAAAACTTACTAAACGTGAGAagctaaaaaatattgaaagaacTGTCGAAAGAAAATTATCATGCAAATCAAATATGTGTACAAAAGCTAGTCCAAAAAACCATATGAATATGATAAATAAGATTAGCTCATATGAATGTGACACTTGTCACAagtcatttgaaaaaagaagtaaGCTCAAAtatcacataaatgcagtacatgatcataGTGAATCCCGTCAATGTAAGAATTGTCATAAAACATTTGCACAAAAAAGTGACCTTAATAGACACATAAACATAGTACACAATCGCATCAaatcctttgaatgtgatttttgtcacaaattatttggactAAATAGTAATCTCAAAGTTCACAAACAGGCAATACATGATAATagtaaaccctttgaatgtgaggtttgttacaaaaaatttggacgtaaaACTAGCCTTAAGATACACATAAAGAAAAGTCATGATCGTTGTAATCTCTTTGAATGTGAGCTTTGTCACAAAGCATTTGCAGATAAAGGTAATCTCGACAGACACATAAACACAGTACACAATCATATCAAATCtcttgaatgtgagatttgtcacaaatcatttggataccagaGTAAACTTAAAATACACAAAATGAAAGTACATAATCAGAGTAAATCCTtcaaatgtgatatttgttaTAAGTCATTTGAACAAATAAGTAAACTCAAAtatcacataaatgcagttcaTGAACACAGTAAATCCCGCGTATGTAAGaattgtcataaatcatttgcaCAAATATGGGACCTTAACAGACACATAGATACAGTACACAATCGTATCAaatcctttgaatgtgagatttgtcacaaattatttggactAAAATGTAACCTCAAAGTTCACGTACAGACAATACACTATCGTATTAAACGCTTTAAATGTcatatttgtcataaatcatttggacgaaaatttaACTTAAATGAACACTTAAATGCGATACAGAGACGTAGGAAACACAATCGTACCAAACCTTTTAAATGTAAGATTTGTCGAAATTCATTTGTCTACAAATGTAGCCTCCAACGTCACGTCGATACTGTACATGCTCGTGATAAACGATTCGAATGTggaatttgtcacaaatcactTTCAACCAAAGGTGCCCTCACAGTTCATATAGATATGGTTCATAATCGTCTTAGACCCTTCGAATGttgcatttgtcacaaatcgtTTTACTACAAAAAAGACCTCGAAAAGCACAAAAGTGCAGTTCATGATTGTCGCAAGCCTTTCGAGTGCGGCAaatgtcacaaatcatttggagaaaaggGTAGCCTCTATAAACACATGAGATCAAAACATGCTCGTAATAAATCCACCTAG
- Protein Sequence
- MQSNVDVVRVKEEPSDTLTNASDDHVSDLVGYCKVENCETSDMHKSEAEVLQERLDEKPIIEFECKNVEPELTSPPITICKSEDQTFQHTVKIENNNPITCRNEKILKILIKKGFNYDDNCQFDVSYHLKLTKREKLKNIERTVERKLSCKSNMCTKASPKNHMNMINKISSYECDTCHKSFEKRSKLKYHINAVHDHSESRQCKNCHKTFAQKSDLNRHINIVHNRIKSFECDFCHKLFGLNSNLKVHKQAIHDNSKPFECEVCYKKFGRKTSLKIHIKKSHDRCNLFECELCHKAFADKGNLDRHINTVHNHIKSLECEICHKSFGYQSKLKIHKMKVHNQSKSFKCDICYKSFEQISKLKYHINAVHEHSKSRVCKNCHKSFAQIWDLNRHIDTVHNRIKSFECEICHKLFGLKCNLKVHVQTIHYRIKRFKCHICHKSFGRKFNLNEHLNAIQRRRKHNRTKPFKCKICRNSFVYKCSLQRHVDTVHARDKRFECGICHKSLSTKGALTVHIDMVHNRLRPFECCICHKSFYYKKDLEKHKSAVHDCRKPFECGKCHKSFGEKGSLYKHMRSKHARNKST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -