Tden002190.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000003.1:5318416-5320177[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.7 64 5.1 0.1 7 17 169 179 169 180 0.92 2 13 1.5e-06 5.5e-05 24.2 0.6 1 23 192 215 192 215 0.98 3 13 0.0057 0.21 12.9 0.5 1 23 221 244 221 244 0.97 4 13 1.1e-06 4.1e-05 24.5 0.3 2 23 250 272 249 272 0.94 5 13 1.6e-05 0.00059 20.9 1.1 1 23 277 300 277 300 0.93 6 13 0.00011 0.0039 18.3 2.5 1 23 305 328 305 328 0.96 7 13 0.00029 0.011 16.9 1.5 1 23 334 357 334 357 0.97 8 13 3.8e-06 0.00014 22.9 0.1 3 23 364 385 363 385 0.95 9 13 0.00013 0.0049 18.0 3.4 1 23 390 413 390 413 0.96 10 13 7.9e-05 0.0029 18.7 2.2 1 23 421 444 421 444 0.93 11 13 1.2e-05 0.00045 21.3 1.8 1 23 449 472 449 472 0.91 12 13 5.8e-06 0.00021 22.3 1.7 1 23 478 501 478 501 0.98 13 13 0.00014 0.005 18.0 0.8 1 23 505 528 505 528 0.92
Sequence Information
- Coding Sequence
- ATGAAAACGAGCAATATATTTAATCATGGCGTTagagTGAAAGAGATACCAAAAGATGTGTCATTTATTGAATACCATGATCATAAAGTAATTGGCATGATGCcaaatgaaaatgttcaattctCAAGATTGCTGCgagaaaattcaATCTATAAGCTCCCAAAGTGTAACAAAAACCATGAAAATAAACTTGGGGACAAAATAGAAATCATGTTCCACGGTAAAGATATCAAGTCCCACATGAATTTATCACTTGAGAAAACTCTTGATTATTCTCAATATCActtgcaaaatataaaaaatagtgatcATCAAGAAACTCAAAACTTAATTAAAATAGGAAACACAGGAGTAGCGGAAATGAAATTTCTCTATGAAGTTGCAAAAAACTTGGGTAAAAATGTTGAGTGCGAACGCAGcgaaataaatgataatgCAGAAGAGTtgaactataaaaataaacttggaACACACATTCACATGGTGTATAATAGTATTGAAAGCGGGAAATCATTCAAGCAGAAAAGTAATCTTCAAACAGCCCACATACAATCATCATATAATGGCATAAAGTTTACATGCGATATATGCGGAAAAAACTTTAACCGAAAGAATCAAGTTAAAGTTCACATCAACACAGTGCATTATAAACTCAAGCCTTACAAATGTGATGAATGTCAAGGATTATTTAGCTTTAAAAACCTTCTCAAATCCCACATTGATATGGTGCATAACGGAATCGCTCAAACGTGCAATGTGTGCGGGAAGACATTTTCTCAAAAAGCTAATCTCAATGTTCACGTCAATGCAATGCACAATGGTATCAGGCATGCGTGCGATATatgcgggaaaaaatttaaccgaAAGGGTTATCTAAAAATCCACACCGATTCGGTACATAAAGGTGTTACACACCCATGCGGCATATGCGGAAAACGGTTTACACAAAAGTGTCAAATCAAAGTTCATGTCAATACAGTGCACAATAAACTCAAACCTCACCAGTGTGACAAATGCCAAGAGTCTTTCAGCTACAACAAGgttctcaaaattcacattgaTACGGTACATAATGGTATCACTCAGGCATGTGATACAtgcggaaaaatattttcacaaaaagcTAACCTTAAAGCTCATATAGATGTGAAGCATACTGGTATCGCACATACATGTGATGTATGCGGTAAGACGTTTTCAAAAAACGATCATCTCAAGTTCCACATTGATACAGTTCATTTTAATCTTAATTTTAAGCCTCACAAATGTGATAAATGTCAAAAAACATTTGGCTACCGAAGTTCACTAAAAACCCACATTGATGCGGTACATAATGGTATTTCACACGCATGTGATAcatgtggaaaaaaatttaaacaaaaaggTCATCttaaaatccacatcgatgcgGTGCATTACAATTTCAGACCTTATAAATGTGATGAATGTCAAAAGTCATTCAGCTACCAAAATGTTCTCAAAAaccatattaaaaaagtacataaaatCACTCACGTATGCGATGTATGtggaaagtcattttcacaaaaCGCTTATCTTCAATTTCACATACAAGGGTATCACTCACACATAGGTTATAATTTAGAATAA
- Protein Sequence
- MKTSNIFNHGVRVKEIPKDVSFIEYHDHKVIGMMPNENVQFSRLLRENSIYKLPKCNKNHENKLGDKIEIMFHGKDIKSHMNLSLEKTLDYSQYHLQNIKNSDHQETQNLIKIGNTGVAEMKFLYEVAKNLGKNVECERSEINDNAEELNYKNKLGTHIHMVYNSIESGKSFKQKSNLQTAHIQSSYNGIKFTCDICGKNFNRKNQVKVHINTVHYKLKPYKCDECQGLFSFKNLLKSHIDMVHNGIAQTCNVCGKTFSQKANLNVHVNAMHNGIRHACDICGKKFNRKGYLKIHTDSVHKGVTHPCGICGKRFTQKCQIKVHVNTVHNKLKPHQCDKCQESFSYNKVLKIHIDTVHNGITQACDTCGKIFSQKANLKAHIDVKHTGIAHTCDVCGKTFSKNDHLKFHIDTVHFNLNFKPHKCDKCQKTFGYRSSLKTHIDAVHNGISHACDTCGKKFKQKGHLKIHIDAVHYNFRPYKCDECQKSFSYQNVLKNHIKKVHKITHVCDVCGKSFSQNAYLQFHIQGYHSHIGYNLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -