Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000027.1:63715-65298[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.7e-05 0.0017 19.4 5.8 1 23 128 151 128 152 0.95

2 12 4.1 1.5e+02 3.9 1.9 11 23 166 179 163 179 0.89

3 12 3.1e-07 1.1e-05 26.3 1.5 1 23 184 207 184 207 0.94

4 12 2.3e-07 8.5e-06 26.7 0.4 1 23 212 235 212 235 0.92

5 12 6.3e-05 0.0023 19.0 3.3 1 23 240 263 240 263 0.95

6 12 5.4e-06 0.0002 22.4 2.2 1 22 268 289 268 289 0.95

7 12 1.8e-06 6.5e-05 23.9 1.7 1 23 296 319 296 319 0.97

8 12 5.4e-07 2e-05 25.6 1.8 1 23 324 347 324 347 0.97

9 12 6.8e-07 2.5e-05 25.2 1.3 1 23 352 375 352 375 0.92

10 12 6.8e-06 0.00025 22.1 2.4 2 23 381 403 380 403 0.93

11 12 3.1e-06 0.00011 23.2 1.3 1 23 408 431 408 431 0.95

12 12 3.7e-05 0.0013 19.8 2.6 1 23 436 459 436 460 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.7e-05	0.0017	19.4	5.8	1	23	128	151	128	152	0.95
2	12	4.1	1.5e+02	3.9	1.9	11	23	166	179	163	179	0.89
3	12	3.1e-07	1.1e-05	26.3	1.5	1	23	184	207	184	207	0.94
4	12	2.3e-07	8.5e-06	26.7	0.4	1	23	212	235	212	235	0.92
5	12	6.3e-05	0.0023	19.0	3.3	1	23	240	263	240	263	0.95
6	12	5.4e-06	0.0002	22.4	2.2	1	22	268	289	268	289	0.95
7	12	1.8e-06	6.5e-05	23.9	1.7	1	23	296	319	296	319	0.97
8	12	5.4e-07	2e-05	25.6	1.8	1	23	324	347	324	347	0.97
9	12	6.8e-07	2.5e-05	25.2	1.3	1	23	352	375	352	375	0.92
10	12	6.8e-06	0.00025	22.1	2.4	2	23	381	403	380	403	0.93
11	12	3.1e-06	0.00011	23.2	1.3	1	23	408	431	408	431	0.95
12	12	3.7e-05	0.0013	19.8	2.6	1	23	436	459	436	460	0.95

Sequence Information

Coding Sequence: ATGAACTCCAGTGATCTATTTAATTGTGCCGTCAGaGTGAAACAAGAGCCTTATGATGATTCgtttcatgaaaatgatgataaaataacTGACGAGACACACGgtgttaaaaatattcgattcttcaaaaaatattcaGCGCTTAAAAAAGTTGACGAAATTCATGAAAGTGAACTTGATgttataaaaatcgaattcgAATGTAAAGATGAGAAGCTCAGCATAAATTCATTAGTAGacaataaaattgaagattatTCTCAAAAATGCTTacagaatataaaatataacgatGATTATGAACCTCTGAACACAGTTAAAATAGAAGCTATGGACggagtgaaaaaagaattggACTTGAATTTCAACGATGAATGTATCTACGCATGTAAGACTTGTGAAAAAACATTTACCCGTAAAATTCATCTAAAGAGACACGTCAAATTATCGCATCATAGTATCAGCTATGCGTGTGATATATTTGCGAAAAAACACTCAAGGAACGTTAATCTTAAGAGACATATGGATTCGATGCATAAGGGTATTACCTACACCTGTGATACATGTGGgaaaacattttcacaaaaaggTCATCTCAAAACCCACATCGAGGCTTTACATAATGGTATCACTTACGCCTGTAAAACATGTGGgaagacattttcacaaaggagtaatctcaaaatccacatcgacgCTTTGCATAATGGCATCACTCACGCCTGTAAAacatgtgagaagaaattctcAACAAAGAATTATCTTAAAATCCACATTGAGACGACGCATAATGGTATCACCCACACCTGTGAAACATGTGGgaagacattttcacaaaagtaTTATCTAAATCAACATGTCAAAACATCGCAAAATGGTATCCCCCACACCTGTGAAACATGTGGGAAGAACTTCGCAACgaaaagctctctctcacttcacATCAAGACTgtgcataatggtatcaccCACACCTGTGAAACATGTGGgaagacattttcacaaaagggTTCTCTTAAAATTCACATTGAGACGACGCACAATGGTATCACCTACACCTGTGATACATGTGGGAAGACATTTTCACGAAAGGGTagtctcaaaactcacatcgaCTTTTTGCATAAGCGTATCACCTGCACCTGTGATACATGTGGGAAGACATTTGCACAAAAGAGTAAACTTAAAATCCACATCCAGGCTAAGCATGATGATATTACACATAAGTGCGatatatgtgaaaaaatattttcaaagcgATCTAACCTCATTCGACACGTCAAAGCGTTGCATTATGACATCACATAcgcatgtgatatatgcgaaaagaaattcacaCGGAAGCAGAATTTCCAAACCCACGTAAGCTCAGTGCACCACAAAAACTCCGatacttataataaatacGGTTCCAAAATAGTGCCTTAA
Protein Sequence: MNSSDLFNCAVRVKQEPYDDSFHENDDKITDETHGVKNIRFFKKYSALKKVDEIHESELDVIKIEFECKDEKLSINSLVDNKIEDYSQKCLQNIKYNDDYEPLNTVKIEAMDGVKKELDLNFNDECIYACKTCEKTFTRKIHLKRHVKLSHHSISYACDIFAKKHSRNVNLKRHMDSMHKGITYTCDTCGKTFSQKGHLKTHIEALHNGITYACKTCGKTFSQRSNLKIHIDALHNGITHACKTCEKKFSTKNYLKIHIETTHNGITHTCETCGKTFSQKYYLNQHVKTSQNGIPHTCETCGKNFATKSSLSLHIKTVHNGITHTCETCGKTFSQKGSLKIHIETTHNGITYTCDTCGKTFSRKGSLKTHIDFLHKRITCTCDTCGKTFAQKSKLKIHIQAKHDDITHKCDICEKIFSKRSNLIRHVKALHYDITYACDICEKKFTRKQNFQTHVSSVHHKNSDTYNKYGSKIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -