Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000001.1:6391191-6393092[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.046 1.7 10.0 1.4 1 23 96 119 96 119 0.91

2 15 1.2e-05 0.00044 21.3 1.0 1 23 125 148 125 148 0.97

3 15 0.00023 0.0084 17.3 1.9 2 23 155 177 154 177 0.97

4 15 3.1e-05 0.0011 20.0 2.1 1 23 183 206 183 206 0.98

5 15 0.0046 0.17 13.2 0.3 1 23 212 235 212 235 0.98

6 15 8.4e-06 0.00031 21.8 1.0 1 23 241 264 241 264 0.94

7 15 1.2e-05 0.00044 21.3 1.0 1 23 270 293 270 293 0.97

8 15 6.2e-05 0.0023 19.1 1.3 2 23 300 322 299 322 0.97

9 15 0.0046 0.17 13.2 0.3 1 23 328 351 328 351 0.98

10 15 6.9e-05 0.0025 18.9 0.7 1 23 357 380 357 380 0.96

11 15 4.8e-05 0.0017 19.4 0.9 1 23 386 409 386 409 0.96

12 15 4.3e-07 1.6e-05 25.8 2.4 1 23 415 438 415 438 0.98

13 15 0.047 1.7 10.0 2.5 2 23 445 467 445 467 0.94

14 15 3.3e-05 0.0012 19.9 0.4 1 23 473 496 473 496 0.98

15 15 9.8e-05 0.0036 18.4 3.7 1 23 502 525 502 525 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.046	1.7	10.0	1.4	1	23	96	119	96	119	0.91
2	15	1.2e-05	0.00044	21.3	1.0	1	23	125	148	125	148	0.97
3	15	0.00023	0.0084	17.3	1.9	2	23	155	177	154	177	0.97
4	15	3.1e-05	0.0011	20.0	2.1	1	23	183	206	183	206	0.98
5	15	0.0046	0.17	13.2	0.3	1	23	212	235	212	235	0.98
6	15	8.4e-06	0.00031	21.8	1.0	1	23	241	264	241	264	0.94
7	15	1.2e-05	0.00044	21.3	1.0	1	23	270	293	270	293	0.97
8	15	6.2e-05	0.0023	19.1	1.3	2	23	300	322	299	322	0.97
9	15	0.0046	0.17	13.2	0.3	1	23	328	351	328	351	0.98
10	15	6.9e-05	0.0025	18.9	0.7	1	23	357	380	357	380	0.96
11	15	4.8e-05	0.0017	19.4	0.9	1	23	386	409	386	409	0.96
12	15	4.3e-07	1.6e-05	25.8	2.4	1	23	415	438	415	438	0.98
13	15	0.047	1.7	10.0	2.5	2	23	445	467	445	467	0.94
14	15	3.3e-05	0.0012	19.9	0.4	1	23	473	496	473	496	0.98
15	15	9.8e-05	0.0036	18.4	3.7	1	23	502	525	502	525	0.95

Sequence Information

Coding Sequence: ATGTTATCGACATTTCAACCTACTGGTTTCATCAGAGTAAAACAAGAGCCAGAGGAAACCACGCAAGGTAACGAAGATCATTCAACTTTACAACATTTCCCAAGgaatatcaatgaaaataaaaatATATATTCTGTTCCAATTCAGCAAAATTTTCCAGAAGATGAAATTGTATCAGAATTTGAATtacatgagCATACGAAATTAAACGAATGTCTGGAAAATTTGGGAAATGAATATGATCTCAAAAAGCAAACAGATTCAGTGCACAAACATATTAAACCGCACATATGCGGCGTATGTAATAAAGAGTTTGGACATAAATTTATTCTCAAAAGGCACATAGATGAAGTGCATAAACTTATAAAACAGTACAAATGTGAAACATGTCAGCGAGAATTTGCACGGAGGGATCGGCTCAGAAGACACATGAGTGTAGTGCATAAACGTGTAAAACAGAACAAATGTGAAACATGTCAGCGAGAGTTCAAATTTGCAAAGACTCTCAAAAATCACATGAACTCAGTACATATGAATATGAAACCTTACAAATGTGAAACATGTCAGCGAGAGTTCAAATTTGCAAAGACTCTCAAAAATCACATGAACTCAGTACATATGAATATGAAACCTTACAAATGTGAAACATGTCTGATAGAATTTGGATTAAAAAGTAAACTCTTAAAGCACATCAAAATTGTGCATAAACTTTGTAAACATTATAAATGTGAAATATGTCAGcgagaattcaaattttcaaataatctcAAAAGGCACATAGATGAAGTGCATAAACTTATAAAACAGTACAAATGTGAAACATGTCAGCGAGAATTTGCACGGAGGGATCGGCTCAGAAGACACATGAGTGTAGTGCATAAACTTGTAAAACAGAACAAATGTGAAATATGTCAGCGAGAGTTCAAATTTGCAAAGACTCTCAAAAATCACATGAATTCAGTACATATGAATATGAAACCTTACAAATGTGAAACATGTCTGATAGAATTTGGATTAAAAAGTAAACTCTTAAAGCACATCAAAATTGTGCATAAACTTTGTAAACATTATAAATGTGAAATATGTCAGCGAgaattcgaatttttaaataatctcaAAAGGCACGTGAATTTAGTGCATTTGAATAGGAAACCTTATAAATGTGAAACATGTCAGAAAGCATTTGGATCGCCGTATCATATCAAAAGACACATCAATGCAGTGCATAAACTTATAAGTCAATACAAATGTGAAACATGTCATAAGAAGTTTGCACAAAAATCCGATCTGAAAATACACATGAATATTGAGCATAAACTTATCCAACCCCGCAGATGTGACACATGCCATAAggaatttggagaaaaatgcAGTCTGAAAGTGCATGTTGATGTAGTGCATAAACGTATTAAACAGTACAAATGTGAAACATGTCCGAAAGAATTTGGATATAAACAACTTCTAAAACAGCACATCAACGTGGTGCATAAACATATTAAACAGTACAAATGTGAAACATGTTCGAAAGCATTTGGATACAGTCATCATCTCAAAAGGCACATCAGCGAGGTGCATAAACTTATCTACTGA
Protein Sequence: MLSTFQPTGFIRVKQEPEETTQGNEDHSTLQHFPRNINENKNIYSVPIQQNFPEDEIVSEFELHEHTKLNECLENLGNEYDLKKQTDSVHKHIKPHICGVCNKEFGHKFILKRHIDEVHKLIKQYKCETCQREFARRDRLRRHMSVVHKRVKQNKCETCQREFKFAKTLKNHMNSVHMNMKPYKCETCQREFKFAKTLKNHMNSVHMNMKPYKCETCLIEFGLKSKLLKHIKIVHKLCKHYKCEICQREFKFSNNLKRHIDEVHKLIKQYKCETCQREFARRDRLRRHMSVVHKLVKQNKCEICQREFKFAKTLKNHMNSVHMNMKPYKCETCLIEFGLKSKLLKHIKIVHKLCKHYKCEICQREFEFLNNLKRHVNLVHLNRKPYKCETCQKAFGSPYHIKRHINAVHKLISQYKCETCHKKFAQKSDLKIHMNIEHKLIQPRRCDTCHKEFGEKCSLKVHVDVVHKRIKQYKCETCPKEFGYKQLLKQHINVVHKHIKQYKCETCSKAFGYSHHLKRHISEVHKLIY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -