Tden003593.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000006.1:2845014-2846438[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0016 0.059 14.6 0.1 1 23 30 53 30 53 0.97 2 15 6.7e-05 0.0025 19.0 3.6 1 23 59 82 59 82 0.97 3 15 0.00062 0.023 15.9 1.0 1 23 88 111 88 111 0.95 4 15 4.5e-05 0.0017 19.5 4.7 1 23 117 140 117 140 0.97 5 15 0.00068 0.025 15.8 0.4 1 23 146 169 146 169 0.96 6 15 0.0024 0.089 14.1 2.4 1 23 175 198 175 198 0.97 7 15 4.8e-05 0.0018 19.4 2.4 1 23 204 227 204 227 0.96 8 15 5.1e-06 0.00019 22.5 1.4 1 23 241 264 241 264 0.96 9 15 0.00026 0.0096 17.1 2.2 1 23 270 293 270 293 0.98 10 15 1.7e-06 6.3e-05 24.0 0.2 1 23 299 322 299 322 0.97 11 15 7.3e-06 0.00027 22.0 0.4 1 23 328 351 328 351 0.97 12 15 0.00043 0.016 16.4 0.4 1 23 357 380 357 380 0.97 13 15 0.0066 0.24 12.7 0.7 1 23 386 409 386 409 0.97 14 15 4.4e-06 0.00016 22.7 1.3 1 23 415 438 415 438 0.97 15 15 0.00092 0.034 15.4 4.0 1 23 444 467 444 467 0.97
Sequence Information
- Coding Sequence
- atgaataaaagtgaggagaaaatcgaaaaaatagtctcaaaagataatttaagtgaagcggacattgttgtttcagacgacaaaaaatacgtttgtgatatttgccaggaggcatttacactggAATCAAGattgataacacaccgagacacgATTCacaatgagcaaaaaaattactcatgtgacaaatgtgaaaagaaatttgagttccgaagtcatttgagtagacatcaaatatcagaacacaaaggccacaaagattttgcatgcgacagatgcgaggaaaaatttgttaaacaaacaaatttgtttacgcaccaaaaattggtACATAAGGATCGCAAggatttcacgtgcaacaagtgcgagaaaaaatttgaaaataaatcaactttattcaaacataaaaaagtattccacgaagttttcaaagattacttatgtgaaaagtgcgccaagagatttggaaatagaCGCGGTTTGCTCCTGCACATAAGGACAATACATGatgatcgcaaagattacgcatgcgacaattgcaaagagatatttagaaaaaaatcccaTTTGCTCTTTCatataaagacagtacacgcaattcagaaagattttgcatgcgacaagtgtgggCAGAAATTTGCATACAACTCCCATTTGCTTTACCACCAAAAAAAAGTCCACGAAGATCGGAAACATTTCACCATCAAAatcttcaaagattacttatgtgatgtttgcgagaagaaatttggagataaaagcaatttgaaaaagcataaaaaaacagtccacgaaggtcgaaagGATTTTGTATGCGGTAgctgtgaaaagaaatttggtcaTAAAATGACtttgatcaggcaccaaaagacagtacacgatggtcggaaagattatgcatgtgacaattgtggacagaaatttggaagaaattcagatttgttgaggcaccaaagggtagtacacgaaggtcggaaagattttgcatgcgacaattgcgagaagaagtttggacaaaaagtaaatttgctcttgcacatgagaacagtccatgagggtcgaaaagattttgcatgcgacaaatgtgagcaaaaatttgtacaaaaatcggttttgcttttacacctaaagacagttcatgagggttgcaaagattttgcatgcgacaaatgcgagaagaaatttggaaaaaaatcgattttgcttttacacctaaagacagttcatgagggttgcaaagatttcgcatgcgacaaatgcgagaagaaatttggtcaaaaaattaatttgaccaggcaccaaaagacagtccatgaaaatcaaaaagattTCGTGTGCggcaagtgcgaaaagaaatgtgtacataaaaatactttgatcAGGCACCAAGAGACAGAACACGAACTTATCAAAGACTTTGCCTGA
- Protein Sequence
- MNKSEEKIEKIVSKDNLSEADIVVSDDKKYVCDICQEAFTLESRLITHRDTIHNEQKNYSCDKCEKKFEFRSHLSRHQISEHKGHKDFACDRCEEKFVKQTNLFTHQKLVHKDRKDFTCNKCEKKFENKSTLFKHKKVFHEVFKDYLCEKCAKRFGNRRGLLLHIRTIHDDRKDYACDNCKEIFRKKSHLLFHIKTVHAIQKDFACDKCGQKFAYNSHLLYHQKKVHEDRKHFTIKIFKDYLCDVCEKKFGDKSNLKKHKKTVHEGRKDFVCGSCEKKFGHKMTLIRHQKTVHDGRKDYACDNCGQKFGRNSDLLRHQRVVHEGRKDFACDNCEKKFGQKVNLLLHMRTVHEGRKDFACDKCEQKFVQKSVLLLHLKTVHEGCKDFACDKCEKKFGKKSILLLHLKTVHEGCKDFACDKCEKKFGQKINLTRHQKTVHENQKDFVCGKCEKKCVHKNTLIRHQETEHELIKDFA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -