Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000005.1:78949-80643[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0016 0.057 14.7 0.2 1 23 30 53 30 53 0.96

2 18 5e-05 0.0018 19.4 3.9 1 23 59 82 59 82 0.97

3 18 0.28 10 7.5 0.1 5 21 84 100 83 101 0.92

4 18 0.0032 0.12 13.7 4.5 1 23 109 132 109 132 0.97

5 18 0.0028 0.1 13.9 0.8 1 23 138 161 138 161 0.94

6 18 0.02 0.74 11.2 2.8 1 23 183 206 183 206 0.96

7 18 0.00029 0.011 17.0 1.3 1 23 212 235 212 235 0.91

8 18 4.8e-05 0.0017 19.4 1.1 1 23 241 264 241 264 0.97

9 18 8.1e-05 0.003 18.7 0.5 1 23 270 293 270 293 0.95

10 18 3.7e-06 0.00014 22.9 2.3 1 23 299 322 299 322 0.97

11 18 0.00018 0.0068 17.6 0.6 1 23 328 351 328 351 0.97

12 18 0.00011 0.0041 18.3 0.6 1 23 357 380 357 380 0.97

13 18 0.0003 0.011 16.9 3.2 1 23 386 409 386 409 0.98

14 18 1.1 39 5.7 6.9 1 23 415 438 415 438 0.96

15 18 2e-05 0.00074 20.6 2.5 1 23 444 467 444 467 0.97

16 18 0.00058 0.021 16.0 1.2 1 23 473 496 473 496 0.97

17 18 1.7e-05 0.00063 20.8 0.5 1 23 502 525 502 525 0.98

18 18 7.5e-06 0.00028 21.9 2.0 1 23 531 554 531 554 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0016	0.057	14.7	0.2	1	23	30	53	30	53	0.96
2	18	5e-05	0.0018	19.4	3.9	1	23	59	82	59	82	0.97
3	18	0.28	10	7.5	0.1	5	21	84	100	83	101	0.92
4	18	0.0032	0.12	13.7	4.5	1	23	109	132	109	132	0.97
5	18	0.0028	0.1	13.9	0.8	1	23	138	161	138	161	0.94
6	18	0.02	0.74	11.2	2.8	1	23	183	206	183	206	0.96
7	18	0.00029	0.011	17.0	1.3	1	23	212	235	212	235	0.91
8	18	4.8e-05	0.0017	19.4	1.1	1	23	241	264	241	264	0.97
9	18	8.1e-05	0.003	18.7	0.5	1	23	270	293	270	293	0.95
10	18	3.7e-06	0.00014	22.9	2.3	1	23	299	322	299	322	0.97
11	18	0.00018	0.0068	17.6	0.6	1	23	328	351	328	351	0.97
12	18	0.00011	0.0041	18.3	0.6	1	23	357	380	357	380	0.97
13	18	0.0003	0.011	16.9	3.2	1	23	386	409	386	409	0.98
14	18	1.1	39	5.7	6.9	1	23	415	438	415	438	0.96
15	18	2e-05	0.00074	20.6	2.5	1	23	444	467	444	467	0.97
16	18	0.00058	0.021	16.0	1.2	1	23	473	496	473	496	0.97
17	18	1.7e-05	0.00063	20.8	0.5	1	23	502	525	502	525	0.98
18	18	7.5e-06	0.00028	21.9	2.0	1	23	531	554	531	554	0.97

Sequence Information

Coding Sequence: atggataaaagtgagaagaaatccgaAGAAGTTGGcttcgaaaataatttaagtgagCACGGCACTGTTGTTTCAGACGAAAAACAGTACatttgtgaaatttgtcaggagacatttacactagaatcaagcatgataacacaccgagataCAATTCATGATAAACAAAAAGATTAtgaatgcgacaagtgcaagaagaaatttgagtttcgaagtcatttgagtagacatcaaatatcagtacacaaaggctgcgagatgaaatttgtaaaaagatCGAGTTTGTtaacgcaccaaaaattggtAGAGAAAGATCGCAAAAATTACTCGTGTAaaaagtgcgagaggaaatttgacaataaattaactttattcaagcacaaaaaaatattccacgaagttttcaaaaattacttatgtgaaatgtgcgcgaagagatttggaactaaacatagtttgctcttgcacataaaggCAGTCCATGAAGATCGTAAACATCTCACCAGTGATGAccgcaagaagaaatttggaataaaatcCAAAgtttatgcatgcgacaagtgcaaaaagACATTTAGATTTAAATGGGCATGTCTCACTCACCTAAGGAttgttcacgaaggtcgcaaagattttttatgcgacaagtgcgataagaaatttggacgtaaaGAGCATTTGCTCTGGCACGAGAaggcagtacacgaaggtcagaaaaactacgcatgcgacaattgcaaTAAGAAATTTGCacgaaaatcgattttgcttcggcaccaaaagacagtccacgaaggttgcaaagattatgcatgcgacaaatgcgaaaagaagtttggacaaaaatcaagcttgctcttacaccaaaagGCAGTGCACGAAAATCACAAAAactatgcatgcgacaaatgcaaGAAGACATTTGTACAAAATTCGCATTTGCTCacccaccaaaagatagtacacgaagatTGTAAAGATTATCCGTGCAAtaaatgcgagagaaaatttggatataaatcagACATGTTAAGCCACCTAAGGATAGTACACGAaaatcgtaaagattacgcgtgcgacagGTGTGAGAAGACGTTTGGTTATCCAAGCCGTTTGATCAGGCACCGAAAAActgtccacgaaggtcgcaaagattatcaatgcgacaggtgcgaaaagaaatttggacataaacagagtttgcttttacaccaaaaaacagtgcacgaaagtcgcaaagattttgcatgcgacaggtgCAAGCAAAAATTCGGACATAAGCATCATATGttaatgcacaaaaaaatagtccatgaaggtcgcaaagactacgcatgcgacaagtgcgagaaaatatttggacaaaaatcgcatttgctcacCCATCAAAAGACAACCCATGAAGGTCGCTATGATTTCtcatgcgataaatgcgagagaaaattagCATTTAAATCACAATTGTTAAAGCACCAAAAAGTAGTCCATGggggtcgaaaagattaccaATGTGATAACTGCGAGATGGCATTTggtcaaaaaatgaatttgctccgacaccaaaagacagttcacgaaaatcgcaaagatttcgcatgcgacaattgcgaaaagaaattcgccCAAAAAGCGCATTTGctcaaacaccaaaagacGGTACACAAAGGTTGTAAGGATTACCCATGCGAGAAATGA
Protein Sequence: MDKSEKKSEEVGFENNLSEHGTVVSDEKQYICEICQETFTLESSMITHRDTIHDKQKDYECDKCKKKFEFRSHLSRHQISVHKGCEMKFVKRSSLLTHQKLVEKDRKNYSCKKCERKFDNKLTLFKHKKIFHEVFKNYLCEMCAKRFGTKHSLLLHIKAVHEDRKHLTSDDRKKKFGIKSKVYACDKCKKTFRFKWACLTHLRIVHEGRKDFLCDKCDKKFGRKEHLLWHEKAVHEGQKNYACDNCNKKFARKSILLRHQKTVHEGCKDYACDKCEKKFGQKSSLLLHQKAVHENHKNYACDKCKKTFVQNSHLLTHQKIVHEDCKDYPCNKCERKFGYKSDMLSHLRIVHENRKDYACDRCEKTFGYPSRLIRHRKTVHEGRKDYQCDRCEKKFGHKQSLLLHQKTVHESRKDFACDRCKQKFGHKHHMLMHKKIVHEGRKDYACDKCEKIFGQKSHLLTHQKTTHEGRYDFSCDKCERKLAFKSQLLKHQKVVHGGRKDYQCDNCEMAFGQKMNLLRHQKTVHENRKDFACDNCEKKFAQKAHLLKHQKTVHKGCKDYPCEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -