Tden002709.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000004.1:3427612-3429613[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.00018 0.0067 17.6 0.6 1 23 212 235 212 235 0.96 2 14 2.3e-07 8.4e-06 26.7 0.5 1 23 240 263 240 263 0.96 3 14 0.022 0.79 11.1 0.9 1 23 268 291 268 291 0.92 4 14 7.1e-06 0.00026 22.0 2.1 1 23 296 319 296 319 0.97 5 14 1.2e-05 0.00045 21.3 2.6 1 23 324 347 324 347 0.96 6 14 1.8e-05 0.00066 20.8 1.0 1 23 352 375 352 375 0.96 7 14 1.6e-06 6e-05 24.0 1.1 1 23 380 403 380 403 0.94 8 14 8.9e-06 0.00033 21.7 0.8 1 23 408 431 408 431 0.97 9 14 0.0002 0.0073 17.5 3.0 1 23 436 459 436 459 0.96 10 14 7e-06 0.00026 22.1 0.7 1 23 464 487 464 487 0.96 11 14 0.0056 0.21 12.9 2.6 1 23 492 515 492 515 0.94 12 14 2.6e-06 9.6e-05 23.4 0.6 1 23 520 543 520 543 0.95 13 14 0.0018 0.064 14.5 1.3 1 23 548 571 548 571 0.94 14 14 1.5e-06 5.6e-05 24.1 2.1 1 23 576 599 576 599 0.94
Sequence Information
- Coding Sequence
- ATGGAGTCTAATGGTCCATTCAACTTTCCTGTTAAaGTAAAAGAAGAATCTAATGATGGGTACCATAACGAAAATGCCTATAATGATACGAGAGATCAAGCGTTCgatattgaaaattcgaaatatgCGCAAGTAAATTCCATTCACACGCTTAAGGAATGCAGtggaatgaataattttcagcTTAACGAAGAAGTTAAAGTAGAGTTTGAGTGCAACGATGTAATTTTATTAGTACCTGTTAAAGTGAACGAAGAAACTCATAAATTTCAACAACCTAAccaagaaatgaaaatagaaTTGGCGTGCCCGGATATGAAAACCGATGTGAATTTATCAGTGCCCAATGAAGCAAACGATTGGTCGCATCGGTCTGATCAATATGAAGATGTTAAAATTAGCGATGATTTTGCATCACATTCCTCGATTCAAATAGAAACTGAGGGAATAGTCAAGAAAAGGGTTCTTAGTGATACTCAGAAAACTATAGATTTAAACACTGGCTGCAAACTTAACGGGGggaataacaaaatttattctttagtaaataaaagtaaacaaTCTACTGAGTGTGAAGCAagtttgaaaacattttccGCAAAGATAACTGTGCAAACCCATAATTGTACAACCTATTCGTGTGACATTTGTAAAAAGgcatttaaaagaaaagataTTCTGAAATTGCATATTGATAAGGTGCATAAATGTATCTCTTACCCTTGTGATGATTGTGGAAAGACATTTAAAAGCAAATATTATCTTAAGGTACATATTGATTCAGTGCATAATCGTATCTCTTATCCATGTCACACTTGTGgaaagttatttaaaatcaaagcTTCTCTCAATTTCCATATTGATTCAGTGCATAACTGTATCTCTTACAATTGTGATGATtgtgaaaaatcatataaacACAGAAGTTCTCTAATGACCCACATTAATTCAGTGCATAATCGTGTCAACTACCACTGTCAAACTTGTGGAAAGACATTTCAAACCAAAGCTTCTCTTAAGAAACATATTGATTCAGTACATAACTGTATCTCTTACAATTGTGATGATTGTGGAAAGTCGTATAAACACAGAATTTCTCTAATGACCCACATTGATTCAGTGCATAATCGTGTCAACTACCTCTGTCAAACTTGTGGAAAGACATTTAAAACTAAAGCTTCTCTTAAGAAACATATTGATTCAGTGCATAACTGTATCTCTTACAATTGTGATGATTGTGAAAAGTCATATGAACACAGAAGTTCTCTAATGGCCCACATTAATTCAGTGCATAAACTTGTCAACTACCACTGTCAAACTTGTGGAAAGACATTTAAACAAAAGCTTGGTTTGAAATTGCATATTGATTCATTTCACAATAGTATTACTTACCCATGTCACACGTgtggaaagaaatttacacaaaaggGTGTTCTCACAGCCCATATTGATTCAGAACACAGTGGTCGAAAATATTGTTGCGATATATGCTTGAagtcatataaaaaaaaaatgtctctaaTAACCCATATTGTTTCGAAGCATAATTGTATTACATACCCATGTCACACGTGTGGAAAGAAATTTACGCAAAAGGGTGCTCTCACAGCCCATGTTGATTCAGAACACAGTGGTCGAAAATATTGTTGCGATATATGCTTGAagtcatataaaaaaaaaatgtctctaaTAGCCCATATTGTTTCGATGCATAATTGTATTACATACCCATGTCACACGTGTGGAAAGAGATTTAAACGCGAAAGTAAACTGAATCGTCATATCGATTTggatcatattattattttcccgTGTGATATTGTAGAAAAACGTCCACGTAAAAGACAGCTGTGA
- Protein Sequence
- MESNGPFNFPVKVKEESNDGYHNENAYNDTRDQAFDIENSKYAQVNSIHTLKECSGMNNFQLNEEVKVEFECNDVILLVPVKVNEETHKFQQPNQEMKIELACPDMKTDVNLSVPNEANDWSHRSDQYEDVKISDDFASHSSIQIETEGIVKKRVLSDTQKTIDLNTGCKLNGGNNKIYSLVNKSKQSTECEASLKTFSAKITVQTHNCTTYSCDICKKAFKRKDILKLHIDKVHKCISYPCDDCGKTFKSKYYLKVHIDSVHNRISYPCHTCGKLFKIKASLNFHIDSVHNCISYNCDDCEKSYKHRSSLMTHINSVHNRVNYHCQTCGKTFQTKASLKKHIDSVHNCISYNCDDCGKSYKHRISLMTHIDSVHNRVNYLCQTCGKTFKTKASLKKHIDSVHNCISYNCDDCEKSYEHRSSLMAHINSVHKLVNYHCQTCGKTFKQKLGLKLHIDSFHNSITYPCHTCGKKFTQKGVLTAHIDSEHSGRKYCCDICLKSYKKKMSLITHIVSKHNCITYPCHTCGKKFTQKGALTAHVDSEHSGRKYCCDICLKSYKKKMSLIAHIVSMHNCITYPCHTCGKRFKRESKLNRHIDLDHIIIFPCDIVEKRPRKRQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -