Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000221.1:99543-103148[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 5e-06 0.00018 22.5 1.9 1 23 170 193 170 193 0.94

2 11 3e-05 0.0011 20.1 2.3 3 23 200 221 198 222 0.94

3 11 6.5e-06 0.00024 22.2 1.9 1 23 226 249 226 249 0.94

4 11 2.4e-05 0.00088 20.4 2.5 1 20 254 273 254 275 0.92

5 11 2.8e-05 0.001 20.1 0.4 2 23 391 413 391 413 0.95

6 11 0.0013 0.048 14.9 1.2 1 23 418 441 418 442 0.93

7 11 1.3e-05 0.00047 21.2 0.5 3 23 448 469 447 469 0.95

8 11 5.4e-06 0.0002 22.4 1.8 1 23 474 497 474 497 0.91

9 11 7e-08 2.6e-06 28.3 1.1 1 23 502 525 502 525 0.92

10 11 0.008 0.29 12.4 4.9 1 23 530 553 530 553 0.95

11 11 2.3e-06 8.5e-05 23.6 0.2 1 23 558 581 558 581 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	5e-06	0.00018	22.5	1.9	1	23	170	193	170	193	0.94
2	11	3e-05	0.0011	20.1	2.3	3	23	200	221	198	222	0.94
3	11	6.5e-06	0.00024	22.2	1.9	1	23	226	249	226	249	0.94
4	11	2.4e-05	0.00088	20.4	2.5	1	20	254	273	254	275	0.92
5	11	2.8e-05	0.001	20.1	0.4	2	23	391	413	391	413	0.95
6	11	0.0013	0.048	14.9	1.2	1	23	418	441	418	442	0.93
7	11	1.3e-05	0.00047	21.2	0.5	3	23	448	469	447	469	0.95
8	11	5.4e-06	0.0002	22.4	1.8	1	23	474	497	474	497	0.91
9	11	7e-08	2.6e-06	28.3	1.1	1	23	502	525	502	525	0.92
10	11	0.008	0.29	12.4	4.9	1	23	530	553	530	553	0.95
11	11	2.3e-06	8.5e-05	23.6	0.2	1	23	558	581	558	581	0.96

Sequence Information

Coding Sequence: ATGAGATTACCAACGAGTAAGATGGAATCCAGCAACGTATTCAATACTGCTGttagagtgaaaaaagagcCTCGTGATGAACCTctcaatgataataatgattacaaaataattgacGCGACACCCGTtactcaaaattttaaatacgagATGTTTCGGCGAGAAAATTCGATGCTTCAAGAATATGACGTAAATCAGAAAATTGTACTTGACGACATTCAAATCGAGTTGGAATGTACAGACATGAAGCCCAACTTATGGTCAATGGTGAAAATCGAAGATTATTCTCCAAATCAATGTCAGGATAGCCTTGATTATAAAACCGGAAGCACAATTAAATTAGAAACTGTCGGGACAGTGAAGAAAGAAATGTTAAGCGAAGAAGAAACTGATTTGAATTTCGGACGTGGACTCAGCGAACAAAATAAACAAGGAACTGTTTCCAAAGAGCTTAACTATGAACATAGGCTAAAAACTCACATTAATACTACGCATAATGGAATCAGACATGCATGTGACACTTGTGGAAAATCATTCACACAAAAGAGTAATCGCAATAGGCACATCGAATCGGTGCATTGTAAAATAAGGTATGGATGTGGTGTATGTGGAAAATCATTCAGATATAAGGGTCATCTCAAAAAACACGTCGATTCGGTGCATCATAAAATGAGGCATGCATGTGATACATGCCAGAAGACATTCTCAGACAAGAGTACTCTCAAAAATCATATCGAATCGGAGCATAATGGTGTCAGGCATGCATGCGACAtttgtggaaagacattctcacaaaaatgtaatctCAAAACCCACACCGAATCGacccaAGAGCTTCAAAAATATGacgaaaatcatgaaaatgaattggACGACCTGGAAATCGAAATGGAATGTACAGACATGAAGCCCAATTTATTGGCGGTTGCGAAAATTGAAGATTATTCTCCACATCAATGGGAGGATAGTGATGAGTACAAAACTggaagcaaaattaaattagaaacTGTCGGGACAGtgaagaaagaaattttaagCGAAGAAACAACTGATTTGAATTTCGGACATGGACTCAGGAAGCATAATGAAAAAGGAAGTGTTTCAAAAAAGTCGAACTATAAGATGAATCTCAAAGCACACGTGGGTATGGTGCAAAGTGGTATCAACAATACATGcgatatatgccaaaagacGTTCACACAAAAAGGTAGTCTCAAAGGCCATatcgattcggtgcacaaAGGTGTTAGACATGCATGCGATATTTGCGGAAATGTTTTTAAACGAAGAGGCGATATCAAAAAACACGTCGATTCGGTGCATCATAAAATTACGAATCCTTGTAATAAATGCCCAAAGACATTCTCAGAAAAGGGTAGTCTCAAAAagcacatcgattcggtgcacaaAGGTGTTAGACATGCATGTGACGAATGCGGAAAGAATTTCACACGTAAAAATCATCTCCAAAACCATATCGACGCAGTGCACAATGGAATCGGCTTCGCATGTGACGTatgcggaaagacattcacacaGAATAGTCATCTCAAAAGGCATATGGATGCGGAGCACAATGGAATCACCCACGCATGTGAtttctgtgaaaaaaaatataaatatcaaactCATCTCAATGAACATGTCAAATCCTCGCACAGTGGTATCGTATATTCATGCGGGACATGCGGCAAGACATTCGGACAGAAAAGAAATCTCAGAGCTCACATCGATGTGGCGCACCGCTCGCTCAATATTACGTAA
Protein Sequence: MRLPTSKMESSNVFNTAVRVKKEPRDEPLNDNNDYKIIDATPVTQNFKYEMFRRENSMLQEYDVNQKIVLDDIQIELECTDMKPNLWSMVKIEDYSPNQCQDSLDYKTGSTIKLETVGTVKKEMLSEEETDLNFGRGLSEQNKQGTVSKELNYEHRLKTHINTTHNGIRHACDTCGKSFTQKSNRNRHIESVHCKIRYGCGVCGKSFRYKGHLKKHVDSVHHKMRHACDTCQKTFSDKSTLKNHIESEHNGVRHACDICGKTFSQKCNLKTHTESTQELQKYDENHENELDDLEIEMECTDMKPNLLAVAKIEDYSPHQWEDSDEYKTGSKIKLETVGTVKKEILSEETTDLNFGHGLRKHNEKGSVSKKSNYKMNLKAHVGMVQSGINNTCDICQKTFTQKGSLKGHIDSVHKGVRHACDICGNVFKRRGDIKKHVDSVHHKITNPCNKCPKTFSEKGSLKKHIDSVHKGVRHACDECGKNFTRKNHLQNHIDAVHNGIGFACDVCGKTFTQNSHLKRHMDAEHNGITHACDFCEKKYKYQTHLNEHVKSSHSGIVYSCGTCGKTFGQKRNLRAHIDVAHRSLNIT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -