Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000005.1:2323733-2325517[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.0065 0.24 12.7 0.1 1 23 30 53 30 53 0.95

2 18 0.00067 0.024 15.8 0.3 1 23 83 106 83 106 0.95

3 18 0.00013 0.0048 18.0 4.8 1 23 112 135 112 135 0.97

4 18 0.0091 0.33 12.3 0.6 1 23 141 165 141 165 0.91

5 18 4.6e-05 0.0017 19.5 2.3 1 23 171 194 171 194 0.97

6 18 3.3e-05 0.0012 19.9 2.0 1 23 200 223 200 223 0.96

7 18 1.1e-05 0.00039 21.5 1.1 1 23 229 252 229 252 0.98

8 18 7.7e-05 0.0028 18.8 2.8 1 23 258 281 258 281 0.94

9 18 8.5e-06 0.00031 21.8 1.9 1 23 287 310 287 310 0.97

10 18 1.2e-05 0.00044 21.3 0.7 1 23 316 339 316 339 0.96

11 18 7e-06 0.00026 22.0 0.9 1 23 345 368 345 368 0.97

12 18 1e-05 0.00038 21.5 0.6 1 23 374 397 374 397 0.96

13 18 2.1e-05 0.00075 20.6 0.9 1 23 403 426 403 426 0.97

14 18 5.2e-06 0.00019 22.5 1.8 1 23 432 455 432 455 0.97

15 18 0.00014 0.005 18.0 0.7 1 23 461 484 461 484 0.97

16 18 0.00032 0.012 16.8 1.9 1 23 490 513 490 513 0.97

17 18 3.6 1.3e+02 4.1 0.5 3 23 521 542 519 542 0.89

18 18 0.0021 0.078 14.2 4.0 1 23 548 571 548 571 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.0065	0.24	12.7	0.1	1	23	30	53	30	53	0.95
2	18	0.00067	0.024	15.8	0.3	1	23	83	106	83	106	0.95
3	18	0.00013	0.0048	18.0	4.8	1	23	112	135	112	135	0.97
4	18	0.0091	0.33	12.3	0.6	1	23	141	165	141	165	0.91
5	18	4.6e-05	0.0017	19.5	2.3	1	23	171	194	171	194	0.97
6	18	3.3e-05	0.0012	19.9	2.0	1	23	200	223	200	223	0.96
7	18	1.1e-05	0.00039	21.5	1.1	1	23	229	252	229	252	0.98
8	18	7.7e-05	0.0028	18.8	2.8	1	23	258	281	258	281	0.94
9	18	8.5e-06	0.00031	21.8	1.9	1	23	287	310	287	310	0.97
10	18	1.2e-05	0.00044	21.3	0.7	1	23	316	339	316	339	0.96
11	18	7e-06	0.00026	22.0	0.9	1	23	345	368	345	368	0.97
12	18	1e-05	0.00038	21.5	0.6	1	23	374	397	374	397	0.96
13	18	2.1e-05	0.00075	20.6	0.9	1	23	403	426	403	426	0.97
14	18	5.2e-06	0.00019	22.5	1.8	1	23	432	455	432	455	0.97
15	18	0.00014	0.005	18.0	0.7	1	23	461	484	461	484	0.97
16	18	0.00032	0.012	16.8	1.9	1	23	490	513	490	513	0.97
17	18	3.6	1.3e+02	4.1	0.5	3	23	521	542	519	542	0.89
18	18	0.0021	0.078	14.2	4.0	1	23	548	571	548	571	0.97

Sequence Information

Coding Sequence: atggataaaagcgAAAAGAAATCCGAAGAAGTTCtctcggaaaataattcaagtgaacatGACATTGATGTTTCAGACGATAAACaatacatttgtgatatttgtcaagaGGCATTTACTCTggaatcaagtatgataacacaccgagacaaAATTCATAGTCAACAAAAAGATGACGAGAAGAAcgttgagttccgaagtcatttgagtacaCACCAAGTATTAGTACACAAAGTTCGCAacgatttcgcatgcgaccagtgcgagaataaatttgtgaaaaaatcaagtttgattGCGCATCAAAAATTAGCACACAAAAAACGCGAggatttcacgtgcaacaaatgcaaaagaaaatttgaaaataaatcgactttactcaagcacaaaaaaatattccacgaagtcctcaaagattatttatgtgaaagaTGCGCcaaaagatttggaaataaacaaagtttgctcttgcacataaagacaacagtccacgaaggtcgcaaagatttcgcatgcgaaaaatgcgagaagaaatttgggcatttcggaaatttgaaaagacaTCTAAATActgtccatgaaggtcgaaaaaaGCACAATTGTGACacgtgtgagaagaaatttacacaaaaatggAGTTTGGTCgcccaccaaaaaacagtacatgatggtcgcaaagatttcgtttGTGACAAGTGTgcgaagaaatttacacaaaaaccgaatttgctctaccaccaaagaACAgcacacgaaggtcgtaaagactaTACGTGCGAAAAGTGCGAGAAAAGATTTGCCCAAAAATCGGATTTGTTAAAGCACTGCAGGATAGTCcatgaaagtcgcaaagatttcgcatgtgacaagtgtgagaagaaatttacacaaaaaccgaatttgctctaccaccaaaggacaacacatgaaggtcgtaaagattacccatgcgaaaagtgcgagaaaaaatttgcccAAAAATCGGATTTGTTAAAGCACAATAGGTtggtacacgaaggtcgcaaagatttcgcatgtgacaattgtgagaagaaatttacacaaaaaccgaatttgctctaccaccaaagaACAgcacacgaaggtcgtaaagattatcCATGCGAAAAGTGCGAGAAAAGATTTGCCCAAAAATCGGATTTGTTAAAGCACAATAGGTtggtacacgaaggtcgcaaagatttcgcatgtgacaattgtgagaagaaatttacacaaaaaccgagtttgctctaccaccaaaggacagcacacgaaggtcgtaaagattacccatgcgaAAAGTGCGAGAAAAGATTTGCccaaaaatcagatttgttaaagcaccaTAGGttaatacacgaaggtcgcaaaaatttcgcatgtgacaggtgtaacaagaaatttggggaacgAGGCAGTTTGatcaaacatcaaaaaacagtccatgaaggtcggaaagatttcgcatgcgacaagtgtgaaaagaaatttggatataaaagTTCTTtgtttttgcacaaaaaaacagtacatgaaggaCGCAGCGATTtggcatgcgacaaatgcgagaagaaatatggGCTTAAGCAGAAATTGCTTTTTCATCAAAGggcagtccacgaaggtcacaaagattatgcatgcgaccagtgcgagaaaaaatttgggtaTAGATGCAATTTCATCAAACATCGAAAAACAGtacacaacattttttaa
Protein Sequence: MDKSEKKSEEVLSENNSSEHDIDVSDDKQYICDICQEAFTLESSMITHRDKIHSQQKDDEKNVEFRSHLSTHQVLVHKVRNDFACDQCENKFVKKSSLIAHQKLAHKKREDFTCNKCKRKFENKSTLLKHKKIFHEVLKDYLCERCAKRFGNKQSLLLHIKTTVHEGRKDFACEKCEKKFGHFGNLKRHLNTVHEGRKKHNCDTCEKKFTQKWSLVAHQKTVHDGRKDFVCDKCAKKFTQKPNLLYHQRTAHEGRKDYTCEKCEKRFAQKSDLLKHCRIVHESRKDFACDKCEKKFTQKPNLLYHQRTTHEGRKDYPCEKCEKKFAQKSDLLKHNRLVHEGRKDFACDNCEKKFTQKPNLLYHQRTAHEGRKDYPCEKCEKRFAQKSDLLKHNRLVHEGRKDFACDNCEKKFTQKPSLLYHQRTAHEGRKDYPCEKCEKRFAQKSDLLKHHRLIHEGRKNFACDRCNKKFGERGSLIKHQKTVHEGRKDFACDKCEKKFGYKSSLFLHKKTVHEGRSDLACDKCEKKYGLKQKLLFHQRAVHEGHKDYACDQCEKKFGYRCNFIKHRKTVHNIF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -