Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000050.1:474853-476831[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.5e-06 0.00031 21.8 2.6 2 23 158 180 157 180 0.95

2 14 2.1e-06 7.7e-05 23.7 1.2 1 23 185 208 185 208 0.95

3 14 3.8e-07 1.4e-05 26.0 2.4 1 23 213 236 213 236 0.96

4 14 1.7e-06 6.3e-05 24.0 0.9 1 23 241 264 241 264 0.95

5 14 0.00036 0.013 16.7 1.5 2 23 270 292 270 292 0.95

6 14 2.8e-05 0.001 20.2 0.6 1 23 297 320 297 320 0.97

7 14 1.2e-05 0.00045 21.3 1.2 1 23 325 348 325 348 0.95

8 14 0.00033 0.012 16.8 1.1 1 23 353 376 353 376 0.96

9 14 1.3e-06 4.7e-05 24.4 0.4 1 23 381 404 381 404 0.96

10 14 0.0006 0.022 16.0 1.9 1 23 409 432 409 432 0.94

11 14 3.6e-06 0.00013 22.9 3.2 1 23 437 460 437 460 0.95

12 14 1.8e-07 6.7e-06 27.0 0.9 1 23 465 488 465 488 0.96

13 14 8.6e-05 0.0031 18.6 2.0 1 23 493 516 493 516 0.94

14 14 4.7e-06 0.00017 22.6 0.3 1 23 521 544 521 544 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.5e-06	0.00031	21.8	2.6	2	23	158	180	157	180	0.95
2	14	2.1e-06	7.7e-05	23.7	1.2	1	23	185	208	185	208	0.95
3	14	3.8e-07	1.4e-05	26.0	2.4	1	23	213	236	213	236	0.96
4	14	1.7e-06	6.3e-05	24.0	0.9	1	23	241	264	241	264	0.95
5	14	0.00036	0.013	16.7	1.5	2	23	270	292	270	292	0.95
6	14	2.8e-05	0.001	20.2	0.6	1	23	297	320	297	320	0.97
7	14	1.2e-05	0.00045	21.3	1.2	1	23	325	348	325	348	0.95
8	14	0.00033	0.012	16.8	1.1	1	23	353	376	353	376	0.96
9	14	1.3e-06	4.7e-05	24.4	0.4	1	23	381	404	381	404	0.96
10	14	0.0006	0.022	16.0	1.9	1	23	409	432	409	432	0.94
11	14	3.6e-06	0.00013	22.9	3.2	1	23	437	460	437	460	0.95
12	14	1.8e-07	6.7e-06	27.0	0.9	1	23	465	488	465	488	0.96
13	14	8.6e-05	0.0031	18.6	2.0	1	23	493	516	493	516	0.94
14	14	4.7e-06	0.00017	22.6	0.3	1	23	521	544	521	544	0.95

Sequence Information

Coding Sequence: ATGGAATCCAGTGGTCTTTTCAACTGTGCCATccgGGTGAAAGACGAACCCTGTGACACGTCTCTTATTGAGAATGATGACAATGGGATCGATGAGGCGCCTGATGTTAAAAATTTCCGATTCTCCATGGAATATTCCAATTTTCAAGAGTGTGACAAAAAGCACGAAAATAAATTGGACGATATGCAAATTTTGTTTGAGTGCAAAGACGTCAAGCTTATTATGAATTCATTAGTAAATAAGAAAACTGACGATTATTCACCAAATTACTTGCAGAATATGAAATATAGCGACGACGAAACTCGAAATGcaattaaaatagaaactcTGGACGAagtcaaaaaagaaatagattTGAATTTCGATTGTGAATTTGCCGAGCACAATGAAAAGAGAAGCGATCAAAAAGATTTCAACGATAAACACAGACTAAAAACAAACATCGATTCTGTGCATACGTGTACCAAAAATACCTGCAAAACATGCAGAAAGACGTTTAAAAGGAAGAGTGATCTGACGAGGCATGTTGAATCAGTGCATAATGGTGTCACCCACTCATGTGATGTTTGCGGAAAGGCATTTACTCAAAAATATAGTCTCAAACTCCACATCGAATCgatgcacaatggtgtcacgcatacatgtgatatatgcggaAAGACGTTTAAAAGAAAGAGTGAGCTGTATAAGCACGTTCAATCAGTACATAATCGTGTCACCCACTCATGTGATGTTTGCGGAAAGGCATTTACTCAAAAATATAGTCTCAAACTCCACATCGAATCGATACACAATGGTGTCACTCGctcatgtgatatttgcggcaAGACGTTTACATGGAAATGTGATCTGACGAGGCATGTTCAATCAGCGCATAATGGTGTCACCTACTCATGTGAAATTTGCGGCaagtcatttttaaataaatataaactcaaaatccacatcgaaaAGATACACATTGGTGTCACCCACTCATGTAATAGATGCGGAAAGTCATTTACTCGAAAAATTGGTCttaaaatccacatcgattcgatcCACAATGGTGTCACTCACTCATGTGATGTATGCGGAAAGACGTATAAAGGAAAGAGTGAAGTGTATAAGCACGTTCAATCAGTACATAATGGTGTCACCTactcatgtgatatttgcggcaAGTTATTTACTCAGAAAAGTAGTCTCAATACCCACATCGATTCAATTCACAATGAGACCaaacatgcatgtgatatttgcggcaAGACGTTTACATGGAAATGTGATCTGACGAGGCATGTTGAATCAGTGCATAATGGTGTCACCCactcatgtgatatttgcggaaaatcATTTTCACATAAAACTAGTCTCAAACTCCACATCGAATCGATGCACATTGGTGTCACTCactcatgtgatatttgcggcaAGTCATTTACTCAGAATGGTAATCTCCAAACCCACATCGAATCgatgcacaatggtgtcacccACTCATGTAATACATGCGGAAAGTCATTTAACCGAAAAGaTTATCTCAAACCCCACATTGATAGAATACATAATGATGTCACCCATTCATGCGGGACATGCGGAAAGACGTTTGGACAAAGAGCAAATCTCAAAGCTCACATCGCTATGGCTCATCGCTCTGCACGCATTATGacttaa
Protein Sequence: MESSGLFNCAIRVKDEPCDTSLIENDDNGIDEAPDVKNFRFSMEYSNFQECDKKHENKLDDMQILFECKDVKLIMNSLVNKKTDDYSPNYLQNMKYSDDETRNAIKIETLDEVKKEIDLNFDCEFAEHNEKRSDQKDFNDKHRLKTNIDSVHTCTKNTCKTCRKTFKRKSDLTRHVESVHNGVTHSCDVCGKAFTQKYSLKLHIESMHNGVTHTCDICGKTFKRKSELYKHVQSVHNRVTHSCDVCGKAFTQKYSLKLHIESIHNGVTRSCDICGKTFTWKCDLTRHVQSAHNGVTYSCEICGKSFLNKYKLKIHIEKIHIGVTHSCNRCGKSFTRKIGLKIHIDSIHNGVTHSCDVCGKTYKGKSEVYKHVQSVHNGVTYSCDICGKLFTQKSSLNTHIDSIHNETKHACDICGKTFTWKCDLTRHVESVHNGVTHSCDICGKSFSHKTSLKLHIESMHIGVTHSCDICGKSFTQNGNLQTHIESMHNGVTHSCNTCGKSFNRKDYLKPHIDRIHNDVTHSCGTCGKTFGQRANLKAHIAMAHRSARIMT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -