Tden001358.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000002.1:6317373-6319373[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.048 1.8 10.0 0.0 5 23 14 33 13 33 0.95 2 20 1.3e-05 0.00047 21.2 0.9 1 23 39 62 39 62 0.97 3 20 0.21 7.7 8.0 0.3 8 23 75 91 70 91 0.93 4 20 0.002 0.072 14.3 0.6 1 23 97 120 97 120 0.97 5 20 2.5e-05 0.00091 20.3 1.1 1 23 126 149 126 149 0.97 6 20 0.00019 0.007 17.5 1.9 1 23 155 178 155 178 0.95 7 20 0.00054 0.02 16.1 0.8 2 23 185 207 184 207 0.92 8 20 9.2e-05 0.0034 18.5 2.3 1 23 213 236 213 236 0.97 9 20 4e-05 0.0015 19.7 1.0 1 23 242 265 242 265 0.96 10 20 0.74 27 6.2 1.7 5 23 275 294 275 294 0.93 11 20 0.0013 0.046 15.0 1.5 1 22 300 321 300 321 0.95 12 20 2.7e-05 0.00099 20.2 1.2 1 23 329 352 329 352 0.98 13 20 0.0004 0.015 16.5 3.6 1 23 358 381 358 381 0.97 14 20 2.2e-06 8.2e-05 23.6 0.7 1 23 387 410 387 410 0.97 15 20 8.9e-05 0.0033 18.6 4.7 1 23 416 439 416 439 0.97 16 20 1.3e-05 0.00049 21.2 1.0 1 23 445 467 445 467 0.98 17 20 0.055 2 9.8 0.1 5 21 481 497 480 498 0.93 18 20 0.00014 0.005 18.0 1.6 1 23 509 532 509 532 0.97 19 20 3.2e-06 0.00012 23.1 2.2 1 23 541 563 541 563 0.99 20 20 6.4e-05 0.0024 19.0 1.7 1 23 573 596 573 596 0.96
Sequence Information
- Coding Sequence
- ATGGATATTAGTAAGGAAAAATCCAAAGTAGTTtctgatatttgtcaggagccATTTACACAGGAAGGAAGCATGACAAGACATCGAAATGTAGTTCACAATGAACAAAACAATTACGCATGCGTCAAGTGTGACAAGAAATTTAAGTTGCGAAGtaatttgagtagacaccttATAACAGTGCATGAAGGACGAAAAGATTTTGCCTGCGATCaacgcgagaaaaaatttggacgaaaatcggcTTTGTTTTTGCACCAAAAGACGgcccacgaaggtcgtaaagattttgcatgcaacaagtgcgagaagttATTTGGGCTTAAACAAAATTTGCTtgtacaccaaaagacagtccacgaaggtcttaaagatttcgcatgcgacaattgtgagagaaaatttacaaaaaaagcgAATCTGCTTtcccaccaaaaaacagtacacgaaggtcgcaaagattttgcttgcaacaggtgtgaaaaaaaatttggacataaatttaatttgatcaggcaccaaGAGATAGTCCATGAAAATCAGAATAATTTCGCATGCATTAAGTGTGAAAAGAagtttggagaaaaatcaaatttgattaagcatcaaaagacagttcacgaaggtcgcaaagattttgcatgcgacaaatgcgaaaagaaatttggaacaaAACAGCATTTGCTAATCCACCAAAAGActgtccatgaaggtcgcaaggattacgcatgtgataactgcgaaaagaaatttggacataaatctACTTTGATCAGGCACCAAGAGATAGTTCATGAAAATCAGAATAATTTCGCATACATTAAGTGTGAAAAGAagattggagaaaaatcgaaattgacaAGACATCATAGAACAGATcacgaaggtcagaaagattttgcatgccacgaatgtgagaagaaatttggatataaaaaaactttgcttattcaccaaaagacagtctatgaaggtcagaaagattacccatgtgacaagtgcgagaagaaatttgaagaaaaattaaatttgactaagcatcaaaagacagtccatgaaggagacaaagattatgcatgcgacaagtgtgaaaagaaatttacacaaaaagatAATTTGCTCTGCCATCGAAGAACGGTTCACGATGGTCGCAACGATTACGCATGTGgtaagtgtgagaagaaattcgggaATCAAAGCAATTTGAGAAAACATCAAATAACAGTTCatgaaaatcgcaaaaatttcgcatgcgacaagtgcgagaagaaatttggacataaacacAGCTTGCGCatccaccaaaggacagtgcACGAAGATCacaaagattttacatgcgacaactgcgaaaagaaattcggacgcAAATCAAGCTTGATTTTACACCTGAAAATTCACGAAACTGTAATTGAAAGTGTCGAAGATTACGCAATcgacaagtgcgagcagaaatttgttgattcgaaaaatttgatcaaCCACCAAAAGGCAAGATCTATCAAAAGAAATGATAGCGTCGATTTTGCATGCCACAATTGCGACCAGAAATTTgaactgaaaataaatttgatcaGACACCTAAAAACAGTGCACAAAGACCGCGAAGATCACGAAGATTAtcaatgcgacaagtgcaaaaagaaattcggacgcAAATCTAGCTTGATCTCACACCTGAAGATACACGAAACTGTCAAGGAAGGTCATACAGATTATTCATGCCACAAGTGCGAGCAGACATTCAGGGCTCAAAGCGATTTGATGAGGCATCGAGAAATAGTCCACGAATGCCGCAGAGATGACGCGAGCAACGAGAGCAACAAAAAGAAATCCAGGCCTCGATCGAATTGGAGCAGGTCCCGAAAATCAGTGCAGAAAATTAACAGAGACAAGCATTTAGATCGGTGCTATAACTGTTTAGTTTGCCGGTACAATCGATCATTGTCCAAAAAAAAGCTGgcgcaaaaacaaaaaaagctcgtgacTAGTAATTATTGA
- Protein Sequence
- MDISKEKSKVVSDICQEPFTQEGSMTRHRNVVHNEQNNYACVKCDKKFKLRSNLSRHLITVHEGRKDFACDQREKKFGRKSALFLHQKTAHEGRKDFACNKCEKLFGLKQNLLVHQKTVHEGLKDFACDNCERKFTKKANLLSHQKTVHEGRKDFACNRCEKKFGHKFNLIRHQEIVHENQNNFACIKCEKKFGEKSNLIKHQKTVHEGRKDFACDKCEKKFGTKQHLLIHQKTVHEGRKDYACDNCEKKFGHKSTLIRHQEIVHENQNNFAYIKCEKKIGEKSKLTRHHRTDHEGQKDFACHECEKKFGYKKTLLIHQKTVYEGQKDYPCDKCEKKFEEKLNLTKHQKTVHEGDKDYACDKCEKKFTQKDNLLCHRRTVHDGRNDYACGKCEKKFGNQSNLRKHQITVHENRKNFACDKCEKKFGHKHSLRIHQRTVHEDHKDFTCDNCEKKFGRKSSLILHLKIHETVIESVEDYAIDKCEQKFVDSKNLINHQKARSIKRNDSVDFACHNCDQKFELKINLIRHLKTVHKDREDHEDYQCDKCKKKFGRKSSLISHLKIHETVKEGHTDYSCHKCEQTFRAQSDLMRHREIVHECRRDDASNESNKKKSRPRSNWSRSRKSVQKINRDKHLDRCYNCLVCRYNRSLSKKKLAQKQKKLVTSNY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -