Basic Information

Insect: Trichogramma dendrolimi
Gene Symbol: -
Assembly: GCA_034770305.1
Location: JAPMIB010000003.1:325813-327709[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5e-05 0.0018 19.4 5.4 1 23 130 153 130 154 0.95

2 16 5.1 1.9e+02 3.6 1.9 11 23 168 181 165 181 0.89

3 16 0.00015 0.0054 17.9 0.5 5 23 190 209 189 209 0.90

4 16 4.7e-06 0.00017 22.6 1.5 1 23 214 237 214 237 0.97

5 16 3.7e-06 0.00014 22.9 3.3 1 23 242 265 242 265 0.92

6 16 2.6e-06 9.5e-05 23.4 0.8 1 23 270 293 270 293 0.92

7 16 2.4e-07 8.7e-06 26.7 1.2 1 23 298 321 298 321 0.93

8 16 1.3e-05 0.00048 21.2 3.9 1 23 326 349 326 349 0.97

9 16 4.6e-05 0.0017 19.5 3.4 1 23 354 377 354 377 0.97

10 16 7.2e-07 2.6e-05 25.2 1.4 1 23 382 405 382 405 0.98

11 16 7.8e-07 2.9e-05 25.0 2.1 1 23 410 433 410 433 0.98

12 16 8.3e-06 0.0003 21.8 2.8 1 23 438 461 438 461 0.92

13 16 1.1e-05 0.00042 21.4 2.5 1 23 466 489 466 489 0.97

14 16 0.00034 0.012 16.7 2.8 1 23 494 517 494 517 0.92

15 16 3.6e-06 0.00013 23.0 2.3 1 23 522 545 522 545 0.97

16 16 0.0018 0.066 14.5 0.5 1 23 550 573 550 573 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5e-05	0.0018	19.4	5.4	1	23	130	153	130	154	0.95
2	16	5.1	1.9e+02	3.6	1.9	11	23	168	181	165	181	0.89
3	16	0.00015	0.0054	17.9	0.5	5	23	190	209	189	209	0.90
4	16	4.7e-06	0.00017	22.6	1.5	1	23	214	237	214	237	0.97
5	16	3.7e-06	0.00014	22.9	3.3	1	23	242	265	242	265	0.92
6	16	2.6e-06	9.5e-05	23.4	0.8	1	23	270	293	270	293	0.92
7	16	2.4e-07	8.7e-06	26.7	1.2	1	23	298	321	298	321	0.93
8	16	1.3e-05	0.00048	21.2	3.9	1	23	326	349	326	349	0.97
9	16	4.6e-05	0.0017	19.5	3.4	1	23	354	377	354	377	0.97
10	16	7.2e-07	2.6e-05	25.2	1.4	1	23	382	405	382	405	0.98
11	16	7.8e-07	2.9e-05	25.0	2.1	1	23	410	433	410	433	0.98
12	16	8.3e-06	0.0003	21.8	2.8	1	23	438	461	438	461	0.92
13	16	1.1e-05	0.00042	21.4	2.5	1	23	466	489	466	489	0.97
14	16	0.00034	0.012	16.7	2.8	1	23	494	517	494	517	0.92
15	16	3.6e-06	0.00013	23.0	2.3	1	23	522	545	522	545	0.97
16	16	0.0018	0.066	14.5	0.5	1	23	550	573	550	573	0.97

Sequence Information

Coding Sequence: ATGGAATCGAGCGAAGAACTTAACGGTGCTGTCAggGTAAAAGTGGAACTTGAAGATAAATCACATATTAACGATGATTTTAATCAAATTCACAAGATACCTAATATCCAAACGGTTAAATCTCAACCAAATAATTCAACTTATGGGCTTCGAACATCAGACGAAACTTATGAAAGTGAGCTTGACgatataaaaatcgaattcgAATGTAAAGACGAGAAGCTCAGTATAAATTCATTAGTAGACAATAAATTTGAAGATTATTCTCAAAAATgcttacaaaatataaaatataacactGATTACAAACCTCTGACCACAGTTAAAATAGAAGCTATGGacgaagtgaaaaaagaattggACTTGAATTTCAACAATGAATGTATCTACGCATGTAAGACTTGTGAAAAAACATTTACTCGTAAAATTCATCTACAAAGACACGTCAAATTATCGCATCATAGTATCAGCTATGCGTGTGatatatttgcaaaaaaacactcAAGGAACGTTAATCTTAAGAGACATATGGATTCGATGCATAAAGGTATTACTTACACCAGTGATACATGTGGgaagacattttcacaaaagggTCATCTCAAAACCCACATCGACGCTTTGCATAATGATATCACTCACACCTGTGAAACATGTGGGAAGAACTTCGCAACgaaaagctctctctcacttcacATCAAGAGTgtgcataatggtatcaccCACACCTGTACTACATGTGGgaagacattttcacaaaagggTCATCTCAAAACCCACATCGACGCTttgcataatggtatcactCACACCTGTGAAACATGTGGgaagacattttcacaaaagggttctctcaaaatccacatcgacgctttgcataatggtatcaccCACACCTGTGAAACATGTGGgaagacattttcacaaaaaagtaatctcaaaatccacatcgaagCTTTGCATAATGGTATCCCCCACACCTGTGAAACATGTGGGAAGACATTTTCACTAAAGAgaaatctcaaaatccacaccAAGACTATGCATAAAGGTATCACCCACACCTGCGAAacatgtgagaagaaattctcAACAAAGAATTATCTTAAAATCCACATTGAGACGACGCATAATGGTATCACCTACACCTGTGAAACATGTGGGAAGAAATTCTCAACAAAGAATTATCTTAAAATCCACATTGAGACgatgcataatggtatcaccTACACCTGTGAAACATGTGGgaagacattttcacaaaagagtaatctcaaaTTTCACATCAAGACTgtgcataatggtatcaccCACACCTGCGAAACATGTGGgaagacattttcacaaaagggTCATCTTAAAATCCACACCGAGGCTATGCATAAGGGTATCACCCACACCTGTGAAatatgtgagaagaaattctcAAGAAAGAATTATCttaaaatccacatcgatacTATGCATAAAGGTATCACCCACACATGTGAAacatgtgagaagaaattctcAAGAAAGAATTATCTTAAAATCCACACCGAGGCTATGCATAAAGGTATCACCCACACATGTGGCACTTGTGGGAAGAAATTCACAACAAAAGGTTCTCTCAAAACCCATATTGATACGTTACATAATAATATCAGGTATAAATGCGTTAGATGTGGAAAGATATTCATAGAAAAGAGACGTTTTCAAATCCATATCGATACGGCACATCCCTGTCGCATCATGAATTAA
Protein Sequence: MESSEELNGAVRVKVELEDKSHINDDFNQIHKIPNIQTVKSQPNNSTYGLRTSDETYESELDDIKIEFECKDEKLSINSLVDNKFEDYSQKCLQNIKYNTDYKPLTTVKIEAMDEVKKELDLNFNNECIYACKTCEKTFTRKIHLQRHVKLSHHSISYACDIFAKKHSRNVNLKRHMDSMHKGITYTSDTCGKTFSQKGHLKTHIDALHNDITHTCETCGKNFATKSSLSLHIKSVHNGITHTCTTCGKTFSQKGHLKTHIDALHNGITHTCETCGKTFSQKGSLKIHIDALHNGITHTCETCGKTFSQKSNLKIHIEALHNGIPHTCETCGKTFSLKRNLKIHTKTMHKGITHTCETCEKKFSTKNYLKIHIETTHNGITYTCETCGKKFSTKNYLKIHIETMHNGITYTCETCGKTFSQKSNLKFHIKTVHNGITHTCETCGKTFSQKGHLKIHTEAMHKGITHTCEICEKKFSRKNYLKIHIDTMHKGITHTCETCEKKFSRKNYLKIHTEAMHKGITHTCGTCGKKFTTKGSLKTHIDTLHNNIRYKCVRCGKIFIEKRRFQIHIDTAHPCRIMN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -