Tden020352.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000107.1:359023-361063[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3e-07 1.1e-05 26.4 0.2 1 23 127 150 127 150 0.96 2 17 1.2e-05 0.00044 21.3 1.0 1 23 155 178 155 178 0.95 3 17 0.00018 0.0067 17.6 0.5 2 23 184 206 184 206 0.92 4 17 9.4e-06 0.00034 21.6 0.3 1 23 211 234 211 234 0.93 5 17 0.0038 0.14 13.4 0.4 2 23 240 262 240 262 0.92 6 17 5.3e-06 0.00019 22.4 1.3 1 23 267 289 267 289 0.95 7 17 2.4e-06 8.7e-05 23.5 2.2 1 23 294 317 294 317 0.92 8 17 0.0013 0.048 14.9 0.1 2 23 323 345 323 345 0.92 9 17 8.1e-05 0.003 18.7 0.7 1 23 350 373 350 373 0.91 10 17 0.0034 0.13 13.6 0.2 2 23 379 401 379 401 0.92 11 17 0.0058 0.21 12.9 2.5 1 23 406 429 406 429 0.90 12 17 7.7e-06 0.00028 21.9 0.3 2 23 435 457 435 457 0.95 13 17 2.9e-05 0.0011 20.1 0.8 1 23 462 485 462 485 0.93 14 17 0.00022 0.0081 17.3 1.7 1 23 490 513 490 513 0.95 15 17 1.3e-05 0.00048 21.2 1.5 1 23 518 541 518 541 0.91 16 17 0.00013 0.0046 18.1 0.4 1 23 546 569 546 569 0.93 17 17 2.7e-05 0.00099 20.2 2.5 1 23 574 597 574 597 0.95
Sequence Information
- Coding Sequence
- ATGGAATTCAGTGGTGTATATAACTGTAATGTCAGAGTGAAGGAGGAACCAAATGATGTTTTCccaattgaaaatgaagattaTAAGATAATTGACAATGCACGCGATGCTAACACTGAAGAATCCTCGCGATGtcaagaaaattttactCATGGGCCTAAAGATATCGAAATAGAATTCGAATACCATTTGAAGCATATGAAATATAGTCACGATTATCAAagtcaaaagaaaataaaagaagaaattgtcGACGAAGTAAAAGAAGAATTGAATTCAGATGGTGAACTCAGTGATGCATTtgatgcaaatgaaaaaacattggCTCAAAATAGTCTATGCAAAACCCAAACTGATAAGGCACGCAATCGTAACAAATATCCATGTAATATATGCGGTAAAAAATTTGcacgaaaaaataatctcaagATCCACATCGATTCAATTCATAATGACGTCAAGCATACGTGTGTTAGatgtggaaagacattcacacaaaaagttagtctcaaaattcacatcaaTGCGATTCATAATGGTATGGCACCAACATGCGAAGtgtgcggaaagaaatttcaaaCGAAGACTAAACTCAAGATCCACATCGATGGAGTACATAATGGTGTTAAACATGCGTGTGGTATGTGTGGAAAGGCATTCTCACAAAAAAGAGATCTCAATATTCACATCAATGCGATGCATAATGACATGGCACCTACATGCGAAGtgtgcggaaagaaattcttaACTAAGACTAAACTCAAGATCCACATCGATGGAGTACATAATGGTGTTAAGCATCCGTGTAGTATATGtaaaaagacattcacacaaaaaGGAGATCTCAAGACCCACATCGATGGACATAATGGTGTTAGACATGCGTGTGGTATGTGTGGAAAATCATTCACACGAAAATCTCATCTCAAAATTCACGTCAATGCAATGCATAATGATATGGCACCTACTTGTGAAGTGTGTGGAAAGAAATTCTTAACTAAGGCTCAACTCAAGATCCACATCGATGGAGTACATAATGGTGTTAAACATGCGTGTGGTATGTgtgaaaagacattcacacaaaaaagAGATCTCAAGATCCACATCGATGCGATGCATAATGGTATGGCACCTACTTGTGAAGTGTGTGGTAAGAAATTCTTAACTAAGGCTAAACTCAAGATTCACATCGATGGAGTACATAATGGTGTTAAACATGCGTGTGGTATGTGTGAAAAGACATTCTCACAAAAATGTCGTCTGAAAATGCACATCGATGCAGTTCATAATGGTATGGCACCTACTTGTGAAATATGCGGTCAAAAATTTACACGAAAGGGTAGTCTCAAGGTCCACATCGATTCAGTTCATAATGGTGTTAAACATGCGTGTGGTAAATgtgaaaagacattcacacaaaaaagAGATCTCAATATTCACATCAATGCGATACATAATGATATGGCACATACTTGCGAAatgtgcggaaagaaattcttaACTAAGAGAAATCTCAAGATCCACATCGATTCAGTTCATAATGGTGTTAGACATGCGTGTGGTAtgtgtggaaagacattcacacaaaaaCCTCACCTCAAGACCCACATCGATGAAGTACATAATGGTGTTAAACATGCGTGTGGTATGTGTGGCAAGACATATCCACGAAAGGATAAACTGAAAATCCACGTGGATTCAAtccataataaaataactcaCACATGTAAGACATGCGGAAAAACGTTTGCGCTAAAAAGTTCTCTCAAGAATCATGTCAAAGCATCGCATGGTAATAATATTCACGCCTGTGAATAA
- Protein Sequence
- MEFSGVYNCNVRVKEEPNDVFPIENEDYKIIDNARDANTEESSRCQENFTHGPKDIEIEFEYHLKHMKYSHDYQSQKKIKEEIVDEVKEELNSDGELSDAFDANEKTLAQNSLCKTQTDKARNRNKYPCNICGKKFARKNNLKIHIDSIHNDVKHTCVRCGKTFTQKVSLKIHINAIHNGMAPTCEVCGKKFQTKTKLKIHIDGVHNGVKHACGMCGKAFSQKRDLNIHINAMHNDMAPTCEVCGKKFLTKTKLKIHIDGVHNGVKHPCSICKKTFTQKGDLKTHIDGHNGVRHACGMCGKSFTRKSHLKIHVNAMHNDMAPTCEVCGKKFLTKAQLKIHIDGVHNGVKHACGMCEKTFTQKRDLKIHIDAMHNGMAPTCEVCGKKFLTKAKLKIHIDGVHNGVKHACGMCEKTFSQKCRLKMHIDAVHNGMAPTCEICGQKFTRKGSLKVHIDSVHNGVKHACGKCEKTFTQKRDLNIHINAIHNDMAHTCEMCGKKFLTKRNLKIHIDSVHNGVRHACGMCGKTFTQKPHLKTHIDEVHNGVKHACGMCGKTYPRKDKLKIHVDSIHNKITHTCKTCGKTFALKSSLKNHVKASHGNNIHACE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -