Tden020394.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000107.1:583930-586488[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.43 16 7.0 0.3 2 23 227 249 226 249 0.82 2 20 2e-06 7.4e-05 23.7 3.7 1 23 255 278 255 278 0.98 3 20 7.8e-05 0.0028 18.8 0.1 1 23 284 307 284 307 0.96 4 20 0.00049 0.018 16.2 1.8 1 23 313 336 313 336 0.96 5 20 0.00023 0.0083 17.3 0.7 1 23 342 365 342 365 0.96 6 20 0.00059 0.022 16.0 0.5 1 23 371 394 371 394 0.97 7 20 2e-05 0.00073 20.6 1.4 1 23 400 423 400 423 0.96 8 20 0.035 1.3 10.4 0.0 5 23 433 452 432 452 0.95 9 20 1.3e-05 0.00049 21.2 1.6 1 23 458 481 458 481 0.96 10 20 0.00022 0.0079 17.4 0.3 1 23 487 510 487 510 0.98 11 20 2.9e-05 0.0011 20.1 3.0 1 23 516 539 516 539 0.97 12 20 0.0025 0.092 14.0 2.5 1 23 545 568 545 568 0.97 13 20 0.0002 0.0073 17.5 0.5 1 23 574 597 574 597 0.97 14 20 5.6e-05 0.002 19.2 1.4 1 23 603 626 603 626 0.96 15 20 0.00058 0.021 16.0 1.2 1 23 632 655 632 655 0.97 16 20 5.6e-05 0.002 19.2 1.4 1 23 661 684 661 684 0.96 17 20 0.0025 0.092 14.0 2.5 1 23 690 713 690 713 0.97 18 20 3.9e-05 0.0014 19.7 1.6 1 23 719 742 719 742 0.97 19 20 0.0004 0.015 16.5 0.8 1 23 748 771 748 771 0.95 20 20 4.4e-06 0.00016 22.7 2.2 1 23 777 800 777 800 0.98
Sequence Information
- Coding Sequence
- ATGGAATCGTTTTACGTTCAACAATCTTCAATAcgGGTAAAGCAAGAGCCGAGTGATGATTTGTTTTGCAATGACTACTTCAAGAACAATATGACGTTTCGACGCAATatcggaaaatttgaaaacaacaTTGGCCAGTATGGCAGTGCTACTCGTGGTCAAGGACAGGAGAACACTCTTTCGGCGTTACAAAATTTAACTGACGATGAAATTATACCAGAGTTTGAATGTCACAATGTAAAGCCAACTATTAATTTCTTGCCAACAAAAATAACTGACTCTGAGTATGTAAATGACTTTGATAACATAAAAAGTGAAGAAAACTTCAGTCATAACGACGAAGTTATAAAGGaagttgtaaataatataaaatcagAATTTTATGTCAATAATGAAGACGAGACAATTGAGAAATTTAATCTCATGCCCTTACAATTTTATGACACCAATGAGAGTGATGTAAGAAGCGATgtaagatttgaaaatttcaagaaagaGACTTCAATTCAAGACGGCCTCGCTACTCATCATCAGTGTGCAAAGTCacttatttttgaaatgaaaaaagaaaaatttagttcCGTGTCTAATCCCAGTAATGCTTTGAGAGCTGTATATGGATCTCAAAAAGATGAGCAGAACGACATCGGTACAATGAACAAcaatttgaagttttttaaatgtgaaGAAGGTCACATagcatttcaaaaaaaagttaatctCACAAGACACATCAATTCTGTTCACAAAAACTGGAAACTATACAAATGCGAAGAGTGTCAAAAAACCTTTAGACGAAAATGTAACCTTAAAATGCACATCAATGTCGTGCACAACAACTTGAAGCATTACACGTGTGAAGTGTGTCCAAAAGCATTTGGAGGGAAACAAGATCTAACAAGACACATCGATTCTGTTCACAAAAAGTTAAAGCCATACAAGTGCAAAATATGTCAAAAAGAATTCGGATTGAAACATAGTCTCAAACTGCATATTGATTCAGTGCATAACAGTTTGAAACCTTTCAAGTGCGAGGTATGTCAAAAAGAATTCGGATTAAAAcataatctcaaaatccacattgATATAGTGCATAACAGTTTGAAACCTTTCAAGTGCGAGGTATGTCAAAAAGAATTCGGATTGAAACGTAGTCTCAAACTGCATATTGATACAGTGCATAACAGTTTGAAACCTTTCAAGTGTGAAGTTTGTCAAAAAGCATTTGGGCGAAAAGATCATCTCAAAATACATACGGAGTCGGTGCACAACAATTTGAAGTCACACAAATATGAAGTATGTGAAAAGGTATTCGGACTAAAAGGTAATCTTAAAATACACATTGATACAGTGCATAACAGTTTGAAACCTTTCAAGTGCGAGGTGTGTCAAAAAACATTCGGACATAAAGGAACTCTAACAAGACACATCGATTCTGTTCACAAAAAGTTAAAGCCATACAAGTGCAAAATATGTCAAAGTGCATTCGGACTAAAAAGTAATCTTAAAATACACATTGATACAGTGCATAACAGTTGGAAACCTTTCAAGTGTTTAGTTTGTCAAAAAGAATTTGGGCAAAAAAGTCATCTCAAAAGACATACGGAGACGGTGCACAACAATTTGAAGTCACACAAATGTGAAGTATGTCAAAAAGAATTCGGATTGAAACATAGTCTCAAACTGCATATTGATACAGTGCATAACAATTGGAAACCTTTCAAGTGCGAGGTATGTCAAAAAGAATTCGGATTGAAACGTAATCTCAAACTGCATATTGATACAGTGCATAACAGTTTGAAACCTTTCAAGTGTGTAGTTTGTCAAAAAGCATTTGGGCAAAAAAGTCATCTCAAAATACATACGGAGTCGGTGCACAACAATTTGAAGTCACACAAATGTGAAGTATGTCAAAAAGAATTCGGATTGAAACGTAATCTCAAACTGCATATTGATACAGTGCATAACAGTTTGAAACCTTTCAAGTGTGTAGTTTGTCAAAAAGCATTTGGGCAAAAAAGTCATCTCAAAATACATACGGAGTCTGTGCACAACAATTTGAAGTCACACAAATGTGAAGTATGTCAAAAAGAATTCGGATTGAAACATAGTCTCAAACTGCATATTGATACAGTGCATAACAGTTTGAAACCTTTCAAGTGTGAAGTTTGTCAAAAAGCATTTGggcaaaaaaatcatctcaaaATACATACGGAGACGGTGCACAACAATTTGAAGTCACACAAATGTGAAATATGTGAAAAAGTATTCGGACTAAAAGGTTATCTTCAACAGCACATCAATTTTGTGCACAATAACTTGAAGCCTTACACGTGTGAAGTGTGTCAAAAAGCATTTGGGCGCAAAGGTCATCTCAGAAGTCACATGAATTCGTTTCACAACAAATGA
- Protein Sequence
- MESFYVQQSSIRVKQEPSDDLFCNDYFKNNMTFRRNIGKFENNIGQYGSATRGQGQENTLSALQNLTDDEIIPEFECHNVKPTINFLPTKITDSEYVNDFDNIKSEENFSHNDEVIKEVVNNIKSEFYVNNEDETIEKFNLMPLQFYDTNESDVRSDVRFENFKKETSIQDGLATHHQCAKSLIFEMKKEKFSSVSNPSNALRAVYGSQKDEQNDIGTMNNNLKFFKCEEGHIAFQKKVNLTRHINSVHKNWKLYKCEECQKTFRRKCNLKMHINVVHNNLKHYTCEVCPKAFGGKQDLTRHIDSVHKKLKPYKCKICQKEFGLKHSLKLHIDSVHNSLKPFKCEVCQKEFGLKHNLKIHIDIVHNSLKPFKCEVCQKEFGLKRSLKLHIDTVHNSLKPFKCEVCQKAFGRKDHLKIHTESVHNNLKSHKYEVCEKVFGLKGNLKIHIDTVHNSLKPFKCEVCQKTFGHKGTLTRHIDSVHKKLKPYKCKICQSAFGLKSNLKIHIDTVHNSWKPFKCLVCQKEFGQKSHLKRHTETVHNNLKSHKCEVCQKEFGLKHSLKLHIDTVHNNWKPFKCEVCQKEFGLKRNLKLHIDTVHNSLKPFKCVVCQKAFGQKSHLKIHTESVHNNLKSHKCEVCQKEFGLKRNLKLHIDTVHNSLKPFKCVVCQKAFGQKSHLKIHTESVHNNLKSHKCEVCQKEFGLKHSLKLHIDTVHNSLKPFKCEVCQKAFGQKNHLKIHTETVHNNLKSHKCEICEKVFGLKGYLQQHINFVHNNLKPYTCEVCQKAFGRKGHLRSHMNSFHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -