Tden003573.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000006.1:2640510-2643823[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 8.6e-05 0.0032 18.6 4.3 2 23 131 153 130 153 0.93 2 19 4e-06 0.00015 22.8 0.4 1 23 157 180 157 180 0.98 3 19 7.2e-06 0.00026 22.0 1.0 1 23 186 209 186 209 0.97 4 19 3.6e-06 0.00013 23.0 1.0 1 23 215 238 215 238 0.95 5 19 0.0001 0.0038 18.4 1.0 1 23 244 267 244 267 0.97 6 19 3.4e-06 0.00013 23.0 0.9 1 23 273 296 273 296 0.95 7 19 5e-05 0.0018 19.4 0.9 1 23 302 325 302 325 0.98 8 19 0.00039 0.014 16.6 0.6 1 23 331 354 331 354 0.91 9 19 1.5e-05 0.00053 21.0 1.0 1 23 360 383 360 383 0.91 10 19 0.00037 0.013 16.6 3.5 1 23 389 412 389 412 0.97 11 19 2.3e-05 0.00084 20.4 3.9 1 23 419 442 419 442 0.95 12 19 0.03 1.1 10.6 2.0 1 23 448 470 448 470 0.97 13 19 3.7e-07 1.4e-05 26.0 0.6 1 23 476 499 476 499 0.97 14 19 5.3e-06 0.0002 22.4 2.2 1 23 505 528 505 528 0.97 15 19 0.001 0.037 15.2 3.2 1 23 534 557 534 557 0.96 16 19 0.0025 0.092 14.0 0.1 1 23 563 586 563 586 0.93 17 19 4e-06 0.00015 22.8 0.3 1 23 593 616 593 616 0.96 18 19 9.3e-05 0.0034 18.5 3.4 1 23 622 645 622 645 0.95 19 19 9e-06 0.00033 21.7 0.1 1 23 652 675 652 675 0.97
Sequence Information
- Coding Sequence
- ATGGAAAATCAACAGAACAATATcagggtgaaggaagagcagAATGCAGATGATGATTATAATTTCTTCTCAACTGAATTTTACGCATCTAGAAGCTTTACAGcatttgataaattatcaaaaaattacaaGAATGAGCCCATGGATGAAAGAGATTTTGAAGTTGTTGAACCTGATCTGGACTctataaaaaaggaaaactgCATCATCGAAACTGATAATCAATGTAACCCACCTATTGCGACAACAGAAAACGAAGATCAGTCTAATTACTTGAACAATAAAAAGctgattatttcaattaaaaaagggTTCAATTACGGAAATAATTGTCAGTTtcaagaatttaaaattaacgaaaCCAAGACACATAAGAGCATCGAACAAtgtgaatgtgaaatttgtcataaatcatttaaattccAACGTCAGCTAAAACGTCATGTTAACGCAGCACATATCAAACAATTTAAGTGTGAGATGTGTAATAAGGCATTTGGAGATCAGTATCAACTTGGAAGGCACATGATGTCGATACATAAACAGAAcgaacccttcgaatgtgacatttgccaCAAAACATATGGACAAAAAAGTTACCTCAAAGACCATATAATGGTAGTACATAACCGTTGTAAAgccttcgaatgtgaaatttgtcacaaatcatttaggTACCCGAGTGTTCTCAAGAAACACATTAATGGAGTACATAAACGTAGCAAACCTttcgagtgtgatatttgtcacaaatcatttggacgcGAATATGACGTCAAAGTTCATGTTAAAAGAGTACATGATAAAatcaaacccttcgagtgtgaaatttgtcacaaatcatttggatatcAGAGTGATCTCAAGACACACATTAATGGAGTACATGAACGTAGCAAATCTttcgagtgtgatatttgtcacaaatcatttggacgcGAATATGACGTCAAAGTTCATGTTAAAACAGTACATGATAAaatcaaaccctttgaatgtgaaatttgtcacaaatcatttgccTACCAACGAGGCTTACTTATTCATAAAagtgcagtacatgatcgtagtcAACTTTTTCAGTGTGATTTTTGTAACAAGTCGTTTGCACAAAAAGGTCACCTCAAAGTTCACGTGGATGCCGTGCATAATCGAAGAAAACCCCAcgagtgtgaaatttgtcacgaatcatttggataccaaAATCTACTTAAAAGACATACTAAGCGAGTACATGAAGGAGTAATCGAATCTTtcgagtgtgagatttgtcataaatcatacAAACGCAAGGATCACTTAAAATTACATGTAGATAGAGTACATAATCAAATCAAACcatttgaatgtgagatttgtcataaatcattctTGCTCAAGAGTCAACGCGATGATCACATGAAGATACATGAAGGTATCAAACCCTTCAAGTGTGAATTATGTGACAAGTCATTTATAAGGAAGAGTAAACTCACAGTTCACATAAATATAGTACACGATCGAATCAAACCATTCAAATGTGAGacttgtcacaaatcatttggacaaaattaTCAACTCCAATCTCACATAAACATAGTACACAATGGCAGCAAACAAcatgaatgtgaaatttgtcacaagtcATATGCTTATATAAACCACCTAAAATCTCATATAAGTGTAGTACATAATCATACCAAACCTTATGAGTGCGATAtctgtcacaaatcatttggctGGAAAAATGGCTTAAGAGCTCATATAATTGCAGTACACGGTAATAATAGCACACCGtttaaatgtgaaatttgttcAAAATCATTTAGCCGCTCTGATGTCTTAAGAGTTCACATAAAGGGAGTACACTTACGGAGCAAAAAGTtcaaatgtgagatttgtcacaaatcatttgtagCAAATCATAATctcaaaaatcacaaaaaCGCAGTACACAATATAGGAAttaaaccttttgaatgtgagatcTGTCCCAAAGCATTTGGATACCTGAGTGAACTCAAAAGACACATCACGAAGGTACATAATAAAGTGGTAACCGAGAAAGTTGAGATTTCTTCGTAG
- Protein Sequence
- MENQQNNIRVKEEQNADDDYNFFSTEFYASRSFTAFDKLSKNYKNEPMDERDFEVVEPDLDSIKKENCIIETDNQCNPPIATTENEDQSNYLNNKKLIISIKKGFNYGNNCQFQEFKINETKTHKSIEQCECEICHKSFKFQRQLKRHVNAAHIKQFKCEMCNKAFGDQYQLGRHMMSIHKQNEPFECDICHKTYGQKSYLKDHIMVVHNRCKAFECEICHKSFRYPSVLKKHINGVHKRSKPFECDICHKSFGREYDVKVHVKRVHDKIKPFECEICHKSFGYQSDLKTHINGVHERSKSFECDICHKSFGREYDVKVHVKTVHDKIKPFECEICHKSFAYQRGLLIHKSAVHDRSQLFQCDFCNKSFAQKGHLKVHVDAVHNRRKPHECEICHESFGYQNLLKRHTKRVHEGVIESFECEICHKSYKRKDHLKLHVDRVHNQIKPFECEICHKSFLLKSQRDDHMKIHEGIKPFKCELCDKSFIRKSKLTVHINIVHDRIKPFKCETCHKSFGQNYQLQSHINIVHNGSKQHECEICHKSYAYINHLKSHISVVHNHTKPYECDICHKSFGWKNGLRAHIIAVHGNNSTPFKCEICSKSFSRSDVLRVHIKGVHLRSKKFKCEICHKSFVANHNLKNHKNAVHNIGIKPFECEICPKAFGYLSELKRHITKVHNKVVTEKVEISS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -