Tden010664.3
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000036.1:591974-594182[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.6e-05 0.00059 20.9 2.3 3 23 160 181 159 181 0.97 2 19 3.6e-05 0.0013 19.8 3.0 1 23 187 210 187 210 0.98 3 19 0.001 0.037 15.3 1.5 1 23 216 239 216 239 0.93 4 19 5.9e-05 0.0022 19.1 0.6 2 23 246 268 245 268 0.95 5 19 2.3e-05 0.00084 20.4 2.8 1 23 274 297 274 298 0.97 6 19 1.5e-05 0.00056 21.0 1.3 2 23 304 326 303 326 0.97 7 19 1.4e-05 0.00051 21.1 1.2 1 23 332 355 332 355 0.96 8 19 0.00026 0.0095 17.1 0.5 1 23 361 384 361 384 0.94 9 19 0.00014 0.005 18.0 0.3 1 23 390 413 390 413 0.95 10 19 2.9e-06 0.00011 23.3 0.7 1 23 421 444 421 444 0.94 11 19 0.00014 0.005 18.0 0.3 1 23 450 473 450 473 0.95 12 19 5.6e-06 0.0002 22.4 0.3 1 23 481 504 481 504 0.94 13 19 2.1e-05 0.00078 20.5 2.3 1 23 510 533 510 533 0.97 14 19 6.9e-07 2.5e-05 25.2 1.0 1 23 539 562 539 562 0.97 15 19 3.2e-06 0.00012 23.1 0.6 1 23 568 591 568 591 0.96 16 19 8.7e-06 0.00032 21.7 2.3 1 23 597 620 597 620 0.97 17 19 3.1e-05 0.0011 20.0 0.3 1 23 626 649 626 649 0.96 18 19 0.0024 0.088 14.1 3.1 1 23 655 678 655 678 0.97 19 19 0.00031 0.011 16.9 0.7 1 23 684 707 684 707 0.95
Sequence Information
- Coding Sequence
- ATGAAGGAAGAGCTGAACGATGCTTGGCAAGATGCAGGCGACGGTTATCAATCACCAgccAATCATGTCTACGAGGCTGTTATTCCATTACAAAAGAAGTTGGATAAAAGTGTATCTATCGATTTTGAGTGTCAGGATGTTAAGCCTAAACTCGAGTTTTTGTCAACAACCATCTGCAAAACGGAGAATCAAAGTTATTCACCTACTGTGGAAATAGAAGACCGAATTGggattgataatttaaataaaaaaaagctgatTATTTTGATAAGAAAGGACTTcgattatgataataattgtcAGTTTCGAGTAAATTCTGGttcaaaattaacaaaaaatgcagacgtgaaaaaattaagaaaaacttATCAAACCAAATCATCTTATCAATATGAAGCACGTCGAAAAACGTATAAAGGGAAAGCGAGTCCGAAATCACGGAGGAATAGGACAAATAAAAGCATTAGACCAGCTgattgtgatatttgtcacaagaCCTTCTTCTCCAAGAGCAGCCTCACTAATCACATAAATTCAGTACACAATCGTATCAAACCATTCGAATgcgatatttgtcacaaatcgtTCGGACACAAAATTAGCCTTACTtatcacataaatacagtacacaaTCGTATCAAACTTttcgagtgtgatatttgtcacaaatcatttggacaaaaaaatagccttaaatttcacataaatgGGGTACATGATCGCATCAAACCTGTCAAATGTGAGAtctgtcacaaatcattttcatccaAGGCTTACGTCACTTCTCACATTGATGTAGTACATAATCGTAAAAAACTTTacgagtgtgacatttgtcatcaatcatttggacaaagaAACAACCTTAAATCTCACATAAACTCAGTTCATCATCGGAACAAACCTTGgaagtgtgacatttgtcgcAAATCATTTGGCTACAAGcgttatctcaaaaaacatataaatacagtacacgaTCGTAaaaaaccctttgaatgtgagatttgtcataaatcatttggagaaaaacaAAACCTCGTAAGACACATCAAGCAggtacataatcggagcagACCTTacgagtgtgacatttgtcataaGTCATTTGGAGGACGGACTTACCTCAAACTTCACATAATAGCACTACATGATCGACTcaaacctttcgaatgtgatatttgtctaaaatcatttggattccAGAATGATCTCAAAAAGCACATAAATGCAGTGCACCTACACCTACAGAaaaaacccttcgagtgtgacatttgtcataaGTCATTTGAAAATCGGGCTTACCTCAAAAGACACATAATAGCAATACATGATCGACTcaaacctttcgaatgtgatatttgtctaaaatcatttggattccAGAATGATCTCAAAAAGCACATAAATGCAGTGCACCTACACCTACAGAAAAAACCCTTTGAGTGTGACATTTGCCGCAAATCATTTGTATCCCAGAGTTACCTCAAATCTCACATAGAAGCAGTACATGATCGACttaaacccttcgaatgtggcatttgtcgcaaatcattttcatacaaGGGTAACCTCATTCATCACAAAAATAAAGTGCATAATGGGATTAAACCCTATGAATGCAAGATTTGTAAAAAGTCATTTGGATACTCGAGTTCTCTCACTAGGCACATAAACTCAGTGCATGATcgaagcaaacccttcgagtgtgatgTATGTaagaaatcatttggacaaaaaagttcCCTCAAAAGTCACATCAACTTAGTGCATAACCGTACCAAATCCTATGAATGTaagatttgtaaaaaatcatttgtataccacagacaattaaaaaatcacattatGATAATACATGACCGAAttaaacccttcgaatgtgatatttgtaacaaattatttagatTAAAGAATAATCTTAGAGTACACATAAGAGCAGTACACGATCGActcaaaccctttgaatgtgtcatttgtcataaatcattttcatggACGGGTAACCTCAATCATCACAAAAATACAGTGCATTATGGTATTAAATCCTTCGAATGCaagatttgtaaaaaatcatttggagcaCTGACAGATCTTACTAGGCACACGAAGGCAATGCATGATCGGAGGAAACCCTAG
- Protein Sequence
- MKEELNDAWQDAGDGYQSPANHVYEAVIPLQKKLDKSVSIDFECQDVKPKLEFLSTTICKTENQSYSPTVEIEDRIGIDNLNKKKLIILIRKDFDYDNNCQFRVNSGSKLTKNADVKKLRKTYQTKSSYQYEARRKTYKGKASPKSRRNRTNKSIRPADCDICHKTFFSKSSLTNHINSVHNRIKPFECDICHKSFGHKISLTYHINTVHNRIKLFECDICHKSFGQKNSLKFHINGVHDRIKPVKCEICHKSFSSKAYVTSHIDVVHNRKKLYECDICHQSFGQRNNLKSHINSVHHRNKPWKCDICRKSFGYKRYLKKHINTVHDRKKPFECEICHKSFGEKQNLVRHIKQVHNRSRPYECDICHKSFGGRTYLKLHIIALHDRLKPFECDICLKSFGFQNDLKKHINAVHLHLQKKPFECDICHKSFENRAYLKRHIIAIHDRLKPFECDICLKSFGFQNDLKKHINAVHLHLQKKPFECDICRKSFVSQSYLKSHIEAVHDRLKPFECGICRKSFSYKGNLIHHKNKVHNGIKPYECKICKKSFGYSSSLTRHINSVHDRSKPFECDVCKKSFGQKSSLKSHINLVHNRTKSYECKICKKSFVYHRQLKNHIMIIHDRIKPFECDICNKLFRLKNNLRVHIRAVHDRLKPFECVICHKSFSWTGNLNHHKNTVHYGIKSFECKICKKSFGALTDLTRHTKAMHDRRKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -