Tden002427.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000004.1:1128536-1130748[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 6.3e-05 0.0023 19.0 2.5 2 23 172 194 171 195 0.94 2 18 1.2e-06 4.5e-05 24.4 0.8 1 23 199 222 199 222 0.94 3 18 3.1e-06 0.00011 23.1 1.9 1 23 228 251 228 251 0.95 4 18 0.00023 0.0083 17.3 4.9 1 23 256 279 256 279 0.96 5 18 7.9e-06 0.00029 21.9 0.2 1 23 284 307 284 307 0.97 6 18 4.3e-05 0.0016 19.6 0.7 2 23 314 336 314 336 0.94 7 18 2.1e-08 7.7e-07 30.0 0.3 1 23 341 364 341 364 0.97 8 18 3.3e-06 0.00012 23.1 0.5 1 23 370 393 370 393 0.97 9 18 2e-07 7.4e-06 26.9 2.5 1 23 398 421 398 422 0.95 10 18 4.8e-07 1.7e-05 25.7 0.6 1 23 427 450 427 450 0.98 11 18 3.6e-05 0.0013 19.8 0.7 1 23 456 479 456 479 0.95 12 18 6.5e-07 2.4e-05 25.3 1.6 1 23 484 507 484 507 0.97 13 18 3.6e-05 0.0013 19.8 0.7 1 23 513 536 513 536 0.95 14 18 3.6e-05 0.0013 19.8 0.1 1 23 541 564 541 564 0.93 15 18 8.8e-06 0.00032 21.7 1.0 1 23 570 593 570 593 0.90 16 18 3.7 1.3e+02 4.0 0.1 7 23 605 622 599 622 0.89 17 18 1.2e-05 0.00043 21.3 0.2 1 23 627 650 627 650 0.97 18 18 7.1e-07 2.6e-05 25.2 0.7 1 23 655 678 655 678 0.97
Sequence Information
- Coding Sequence
- ATGGAATCAAGAGCTATCATCAACTGTGGCGTAagagTAAAAGAAGAACCTTCTGACGTGTTacttattgaaaatgattataatataattgacaATACACTCGAtgtcaacaattttcaattcctCAGACATCAGCAAGAAAATCaaatTCACGTGCTTCAAAAATCTGACGATAATCACGAAAGTGAACTTTACGATTTGGCAATCGAGTTGGAATGTAAAGACATGAAGCCGAGCGTGGATTTATTAGCagttacaaaaattgaaaattggtcTGAAGATCACTTGGTGGCTATTGAAAATAGTAATGAATATCaacctcaaaaaataataaaaaacgaaaCCGTCacgaaagtgaaaaaagaggTTTTTGACGACGTTCCGAAAGAATTTGATATGAATTCCAACCGCGGAGTCAGCGAgccaaataaaagaaaaacagttGTGAAAAAGTTGAACTATAATCAAAAACTGAAAAGACACACTGATCCAGCACGTGGTAATATCACCCTTTCTTGCGATACATGTGGAAAGGCATTTTCACAGAAATGTTCTCTCAAAGTTCACATCGACTCGGTGCACCATAAAATCACTCATGCCTGTGACACATGCGGAAAGACGTTCTCTCAAAAAAGTTCTCTCCAAATCCACATTGATTCGATACATAATAGTCAAAAAAGGTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCGAAAGCATATGCTGAAAGCTCATACCGATTCCATGCATAAAGGCATCACCTACCCATGCGATTGTtgcggaaagacattttcccaaaaatgtaatttgaaaCAACATCTCAATTCAATACATAGGGGCATCGCCTACCCATGTGATTTTTGCGAAAAGGCGTTCTCTCAAACGGGTAATCTCCAAACCCACATCAACTCGGTTcattataatcaaaaaaataacgaatgtGGCGTGTGTGGCAAGAAGTTTTCACAAAAGGGTACTCTGAAAACTCATACTGATTCGATGCATAAAGGCATCACCTACCCATGCGATATCTGCGGAAAGACGTTCTCTCAAAAAAGTTCTCTCCAAACCCACATCAACTCGGTGCATAATAGAATAAAAAGGTACGAATGTGACGTGTGTGGCAAGAAGTTCACACGAAAGAATGTTCTGAAAACTCATATCGATACGATACATAATGGTATCACCTACCCATGTGATTTTtgcggaaagacattttcccggaaaagtaatttgaaaacTCACATCGATTCTATGCATCATAgtgaaaaaagttacaaatgTGACGTGTGTGGCAAGAAGTTCTCGCTAAAGGGTAATCTTCGCACCCACATCAACTCAGTGCATAATAgtcaaaaaagttatgaatgtgACGTGTGTGGCAAGAAGTTCTCGCTAAAGGGTACTCTGAAAACTCATACCGATTCGATGCATAAAGGCATCACGTACCCATGTGATGTATGCGGAAAGACGTTCTCGTACAAGTGTAATCTCCAAACCCACATCAACTCGGTGCATAATAGTCAAAAAAGTTACGAATGTGACGTGTGTGGCAAGAAGTTCTCGCTAAAGGGTACTCTGAAAACTCATACCGATTCGATGCATAAAGGCATCACCTACCCATGTGATGTATGCGGAAAGGCATTCATACACAAATCCTCTGTGAGAGTTCACATTGATGCGGTGCATTGTAATCGAAAACCTCACAACTGCGATGTATgtgaaaagagattttcacaaAGTAGTGATCTAAAACGACATATTGGTTGGATGCATAATGGTAAAAAGCCTTACAAATGTGACGCGAATGGTAAGACATTCAAGCGAAAGGATATTCTGAACACTCATACTGATTCGATACATAAGGGCATCACTTACTCATGCGATGTATGCGGAAATGTATTTAACCGACGGGGTGATCTCAATAAACACGTCAAATCAGCGCATAACAATATCACATATGTATGCGAGACGTGCGgcaagaaattcggacaaaagaGAAATCTCAAGAAACATATCGATACCGCGCACCAATCACGCATCAAAactcaataa
- Protein Sequence
- MESRAIINCGVRVKEEPSDVLLIENDYNIIDNTLDVNNFQFLRHQQENQIHVLQKSDDNHESELYDLAIELECKDMKPSVDLLAVTKIENWSEDHLVAIENSNEYQPQKIIKNETVTKVKKEVFDDVPKEFDMNSNRGVSEPNKRKTVVKKLNYNQKLKRHTDPARGNITLSCDTCGKAFSQKCSLKVHIDSVHHKITHACDTCGKTFSQKSSLQIHIDSIHNSQKRYECDVCGKKFSRKHMLKAHTDSMHKGITYPCDCCGKTFSQKCNLKQHLNSIHRGIAYPCDFCEKAFSQTGNLQTHINSVHYNQKNNECGVCGKKFSQKGTLKTHTDSMHKGITYPCDICGKTFSQKSSLQTHINSVHNRIKRYECDVCGKKFTRKNVLKTHIDTIHNGITYPCDFCGKTFSRKSNLKTHIDSMHHSEKSYKCDVCGKKFSLKGNLRTHINSVHNSQKSYECDVCGKKFSLKGTLKTHTDSMHKGITYPCDVCGKTFSYKCNLQTHINSVHNSQKSYECDVCGKKFSLKGTLKTHTDSMHKGITYPCDVCGKAFIHKSSVRVHIDAVHCNRKPHNCDVCEKRFSQSSDLKRHIGWMHNGKKPYKCDANGKTFKRKDILNTHTDSIHKGITYSCDVCGNVFNRRGDLNKHVKSAHNNITYVCETCGKKFGQKRNLKKHIDTAHQSRIKTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482658;
- 90% Identity
- iTF_01482658;
- 80% Identity
- iTF_01482658;