Tden020347.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000107.1:324892-327386[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 3.3e-07 1.2e-05 26.2 0.5 1 23 158 181 158 181 0.93 2 22 0.001 0.038 15.2 2.4 1 23 186 209 186 209 0.94 3 22 0.00051 0.019 16.2 0.6 1 23 214 237 214 237 0.93 4 22 4.7e-05 0.0017 19.4 0.4 1 23 242 265 242 265 0.93 5 22 9.2e-05 0.0034 18.5 0.6 2 23 271 293 271 293 0.95 6 22 5.2e-06 0.00019 22.4 2.6 1 23 298 321 298 321 0.93 7 22 1e-05 0.00037 21.6 0.3 2 23 327 349 327 349 0.95 8 22 0.00011 0.0042 18.2 0.5 1 23 354 377 354 377 0.91 9 22 1.4e-06 5.3e-05 24.2 0.5 2 23 383 404 383 404 0.95 10 22 1.8e-05 0.00067 20.7 0.5 1 23 409 432 409 432 0.93 11 22 9.2e-05 0.0034 18.5 0.6 2 23 438 460 438 460 0.95 12 22 5.2e-06 0.00019 22.4 2.6 1 23 465 488 465 488 0.93 13 22 2e-05 0.00075 20.6 0.4 2 23 494 516 494 516 0.95 14 22 0.0001 0.0037 18.4 2.1 1 23 521 544 521 544 0.91 15 22 2.8e-05 0.001 20.1 0.6 1 23 549 572 549 572 0.90 16 22 5.5e-05 0.002 19.2 0.2 2 23 578 600 578 600 0.92 17 22 8.1e-07 3e-05 25.0 0.7 1 23 605 628 605 628 0.95 18 22 1.4e-06 5e-05 24.3 1.0 1 23 633 656 633 656 0.95 19 22 8.7e-05 0.0032 18.6 0.8 1 23 661 684 661 684 0.91 20 22 1.6e-05 0.00058 20.9 0.5 2 23 690 712 690 712 0.96 21 22 3.7e-05 0.0014 19.8 3.8 1 23 717 740 717 740 0.96 22 22 0.00053 0.019 16.1 0.6 3 23 745 766 743 766 0.95
Sequence Information
- Coding Sequence
- ATGGAATTCAGTGGTGTATATAACTCTGATGTCAGAGTGAAGGAGGAACCAAATGATGATTTCCCgattgaaaatgaagattaTAAGATAATTGACAATGCAGACGATGCTAACACTGAAGAATCCTCGCGATGtcaagaaaattttACTCATGGGCTTCGAGAATACGATGAAAATTCTGGACCTAATGACGATTTGGAAATAgaatttgaaagtaaatacGAGGAGCTCGGCATTAACTTATTAGTAGTCAAAAAGGTCGAGGTAGATTATCCAGATCATTTGCAGCATATGCAAAATAGTTGCGATTATCAAactcaaaagaaaattaaagaagaaattgTCGACGAAGTAAAAGAGGAATTGAATTCGGATGGTGAACTCAGTGATGCATTtgatgcaaatgaaaaaacatttgctCAAAATAGTCTATGCAAAACCCAAACTGATAAGGCACGCAATCGTACCAAATATTCATGTAATATATgcggtaaaaaattttcacgaaaaaataatctcaaaatccacatcgatgcgATACATAATGGTGTTAAACATGTATGTGTTAcatgtggaaagacattcaaACACAAAGTTAGTATTAAAATGCACATCAATGCGATGCATAATGATATGGCATATACTTGCGAAGtgtgcggaaagaaattcttaACTAAGACTAAACTCAAGACCCACATCGATGGAGTACATAATGGTGTTAAACATGCGTGTGGTATATgtgaaaagacattcacaAAAAAAGGAGATCTCAATATTCACATCAATGCGATGCATAATGATATGGCACCTACTTGTGAAgtgtgcggaaaaaaatttcaaacgaagACTAAACTCAAGATCCACATCAATGGAGTACATAATGGTGTTAAACATGCGTGTGTTAtgtgtggaaagacattcTCACAAAAATCTCATCTCAAAATGCACATCAATGCGATGCATAATGGTATGGCACCTACATGCGAAATGTGCGGTCAAAAATTTATACGAAATAGTAATCTCAAGGTCCACATCGATTCAGTTCATAATGGTGTTAAACATGCGTGTGGTATGTgtgaaaagacattcacacaaaaaGGAGATCTCAAAATGCACATCGACGCAATGCATAATGGTATGGCACCTACTTGTGAAGtgtgcggaaagaaattcacGCGAAAAGGAGATCTCAAGAGGCATATCGATGGACATAATGGCGTTAAACATGCGTGTGGTAcatgtggaaagacattcacaAAAAAAGGAGATCTCAATATTCACATCAATGCGATGCATAATGATATGGCACCTACTTGTGAAgtgtgcggaaaaaaatttcaaacgaagACTAAACTCAAGATCCACATCAATGGAGTACATAATGGTGTTAAACATGCGTGTGTTAtgtgtggaaagacattcTCACAAAAATCTCATCTCAAAATGCACATCAATGCGATGCATAATGGTATGGCACCTACATGCGAAATGTGCGGTCAAAAATTTATACGAAAGAGTAGTCTCAAGGTCCACATCGATTCAGTTCATAATGGTGTTAAACATGCGTGTAGTATGTgtgaaaagacattcacacaaaaaCCTCATCTCAAGACCCACATCGATGGAGTACATAATGGTGTTAAACATGCGTGTGTTACATGTGGAAAGACATTTACACGAAAAGGAGATCTCAAAATGCACATCGACGCAATGCATAATGGTATGGCACCAACATGCGAAGtgtgcggaaagaaatttacaACTGAGACTTCactcaaaattcacatcgaTGGAGTACATAATGGTGTTAAACATGTATGTAATATATGCGGTCAAAAATTCACACGAAAAGGAGATCTCAAGAGGCATATCGATGTAGTTCATTATGGTGTTAAACATGAGTGTGGTAtatgtggaaagacattcacacaaaaatattatctcaAGATCCACATCGATTCAGTTCATAATGGTGTTAAGCATGCGTGTGGTATGTGTAAAAAGACATTCTCACAAAAAGGAGATCTCAAAATGCACATCGATGCGATGCATAATGGTATGGCACCTACTTGTGAAGTGTGTGGAAAGAAATTCGCATTGAAGAGTGGTCTCAAAAAGCACATGGAGTCAATGCATAATAAGATAACTCACCCGTGTGATACGTGCGGCAAGACATTTTCGCAAAAGCATCGTCTTATATCTCACATTAAAATGCAGCACAGAGGCATCGCATGCGTTGTCTgcggagaaaaatttaaacatcgGAAATATCTATACAGACACGTACAAATTGTGCATGAGGGCAATACTCAAGCACGAGATCAATGCAAAAGATCTTAA
- Protein Sequence
- MEFSGVYNSDVRVKEEPNDDFPIENEDYKIIDNADDANTEESSRCQENFTHGLREYDENSGPNDDLEIEFESKYEELGINLLVVKKVEVDYPDHLQHMQNSCDYQTQKKIKEEIVDEVKEELNSDGELSDAFDANEKTFAQNSLCKTQTDKARNRTKYSCNICGKKFSRKNNLKIHIDAIHNGVKHVCVTCGKTFKHKVSIKMHINAMHNDMAYTCEVCGKKFLTKTKLKTHIDGVHNGVKHACGICEKTFTKKGDLNIHINAMHNDMAPTCEVCGKKFQTKTKLKIHINGVHNGVKHACVMCGKTFSQKSHLKMHINAMHNGMAPTCEMCGQKFIRNSNLKVHIDSVHNGVKHACGMCEKTFTQKGDLKMHIDAMHNGMAPTCEVCGKKFTRKGDLKRHIDGHNGVKHACGTCGKTFTKKGDLNIHINAMHNDMAPTCEVCGKKFQTKTKLKIHINGVHNGVKHACVMCGKTFSQKSHLKMHINAMHNGMAPTCEMCGQKFIRKSSLKVHIDSVHNGVKHACSMCEKTFTQKPHLKTHIDGVHNGVKHACVTCGKTFTRKGDLKMHIDAMHNGMAPTCEVCGKKFTTETSLKIHIDGVHNGVKHVCNICGQKFTRKGDLKRHIDVVHYGVKHECGICGKTFTQKYYLKIHIDSVHNGVKHACGMCKKTFSQKGDLKMHIDAMHNGMAPTCEVCGKKFALKSGLKKHMESMHNKITHPCDTCGKTFSQKHRLISHIKMQHRGIACVVCGEKFKHRKYLYRHVQIVHEGNTQARDQCKRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -