Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 5.9 1.2e+03 0.4 0.2 26 44 149 167 146 167 0.78

2 7 0.068 13 6.6 7.1 14 43 168 194 156 200 0.78

3 7 0.00016 0.032 15.0 0.1 18 44 200 223 196 223 0.91

4 7 0.03 5.8 7.8 1.0 18 43 252 274 238 275 0.86

5 7 0.82 1.6e+02 3.2 1.7 19 41 281 300 278 303 0.79

6 7 0.013 2.6 8.9 4.8 1 44 292 331 292 331 0.93

7 7 0.5 97 3.9 0.9 18 30 336 348 334 354 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	5.9	1.2e+03	0.4	0.2	26	44	149	167	146	167	0.78
2	7	0.068	13	6.6	7.1	14	43	168	194	156	200	0.78
3	7	0.00016	0.032	15.0	0.1	18	44	200	223	196	223	0.91
4	7	0.03	5.8	7.8	1.0	18	43	252	274	238	275	0.86
5	7	0.82	1.6e+02	3.2	1.7	19	41	281	300	278	303	0.79
6	7	0.013	2.6	8.9	4.8	1	44	292	331	292	331	0.93
7	7	0.5	97	3.9	0.9	18	30	336	348	334	354	0.78

Coding Sequence: ATGGAATCCAGTGGTTTACTCGATCGCGCTGTCAGAGTGCAAGAAGAGCCTTGTGATGTATCGtcgagtgaaaataattgtgatATGATTGATGAGAAACCTAATCTCAAAAACTTTCAACAATTACCATTTCCTCGAGAAAATTTCAAACATACCCTTCGAAAATGTAAGGAGAATCATAAAAGTGAATTTGACGATGGAATgaagataatttttgaatgtGAAGACGTCAAGCCCAACGTTAATTCATTAATAGTTAAAACAATTGACGATAATTTTCCATATCAATTACAGGATATGAAATACAGTGATGATTTTAACACtccaaatattattaaaatagaacCTATGGGGGTAGTGAAACAGGAAATTGTTGATAACGTTGCAGAATCGAATTTAAATTTCGACGGTGAACTTGACGaacaaaataatgaaagaaGAGTTACAACAGAATCTAACGAAGAACATAAGCTTAAAacccacatcgattcggtacaCAATAAGGTCAAAAGTGCATGCGAAACATGTGGAAAGAATTTATCAAGCAAGAAAAATCTCCAAAGACACATCGATATGATTCACAATGGTGTCAaacatgcatgtgataaatgcggcAAGAAATTCTCAGGTGTGGAAAATCTCAAAAGACACATTGATTCGATACATAGTAAAATCACTCATAAATGTGGTGTATATGGAAagtcattttcattaaaacgtTATCTTCAAATCCACATGATAGGCGTCACACATGCATGCGATATCTGTGGAAAGAAATTCTCAATGAAGACttatctcaaaactcacattgacgcagtgcacaatggtgtcagaTATGCATGTAATAGATGCGAAAAGACATTCAAACAAAAGGATAAActtaaaaaacacatcgatgcGATACATAATGGTACTATACATGCGTGTAGCATTTGTGGAAAAACATGGAGACGAAAggattatctcaaaaaacacatcgagtCGATGCATAATGGTGTCAGATATACGTGCGATGTATGTGAAAAAACATATACAAAAAGAtcatctcaaaaaacacatcgatga
Protein Sequence: MESSGLLDRAVRVQEEPCDVSSSENNCDMIDEKPNLKNFQQLPFPRENFKHTLRKCKENHKSEFDDGMKIIFECEDVKPNVNSLIVKTIDDNFPYQLQDMKYSDDFNTPNIIKIEPMGVVKQEIVDNVAESNLNFDGELDEQNNERRVTTESNEEHKLKTHIDSVHNKVKSACETCGKNLSSKKNLQRHIDMIHNGVKHACDKCGKKFSGVENLKRHIDSIHSKITHKCGVYGKSFSLKRYLQIHMIGVTHACDICGKKFSMKTYLKTHIDAVHNGVRYACNRCEKTFKQKDKLKKHIDAIHNGTIHACSICGKTWRRKDYLKKHIESMHNGVRYTCDVCEKTYTKRSSQKTHR

Sequence clustering based on sequence similarity using MMseqs2