Basic Information

Gene Symbol
-
Assembly
GCA_034770305.1
Location
JAPMIB010000005.1:2461458-2462874[+]

Transcription Factor Domain

TF Family
zf-BED
Domain
zf-BED domain
PFAM
PF02892
TF Group
Zinc-Coordinating Group
Description
The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.00053 0.1 13.4 2.7 19 44 142 164 132 164 0.93
2 9 0.3 59 4.6 1.4 18 38 169 196 167 197 0.90
3 9 1.3 2.5e+02 2.6 1.1 19 29 198 208 195 220 0.74
4 9 0.0028 0.55 11.1 0.9 18 40 225 244 222 248 0.78
5 9 1.5 3e+02 2.3 3.4 19 41 254 273 251 281 0.86
6 9 0.055 11 6.9 0.7 19 34 309 323 302 331 0.78
7 9 0.015 3 8.7 0.2 19 44 337 359 330 359 0.91
8 9 0.0048 0.95 10.3 0.8 17 44 363 387 360 387 0.91
9 9 0.094 18 6.2 1.7 18 43 392 414 390 415 0.91

Sequence Information

Coding Sequence
ATGGAGCCAAGAggtattttcaacttttccgCGAgAGTAAAGATTGAACCCAAAGATGTGCTGcttaatgaaaatgattttcaaatgattGAGGAGGCACCTGATACTAAAAACTTTCAATTCTTAGAATGtctgcaaaaaaattcagtacgAATGCTTCGAGAGTGTGACGAGATGCAAATTGAACTCGAATGTAAAGACATGAAGCCCGACGAGAATTTTTTAGCAGTCAAGAAAATTGAGAATTGTTCCCCAAATCATTTGCAGAATATAAAACTTAGCGATAATTATGCAAATCATGACACAATTAAACGAGAAAAggcgagcagaaaaaaaacagaattgGATTTGAATGCCAATTTTGCACTCACGCAGAAACGCCATCTCATAGCCCACGTCGATGTGGCCCATATTACTCacgcatgtgatatttgtaaaaagaaTTTCACATCGAAGAGTAATCTCAAACGACATATTGATTCGATTCATAATGGTATTCGTCATACTTGTGATACGTGTGGAAAGCAATTCAAAGACAAGTATATTCTTAAAATCCACGTCGATTCTACGCATAATAGTATTTCACATGCATGCGATATATGTAGAAAGACATTCACGCAAAAAGGTTATCTTAAAATCCATATAAATGTGGCACACAACGGTGTCACCAGTACATGCAATATATGCGGGAAGAAATTTTCAGGCTCAAgttatctcaaaatccacatcagTGCAATCCATCGCGGCATAACTCATCCATGCGTTACGTGCGGAAAGACATTCAACCACAAGACCAGTCTCAAAAACCACATCAAGACCCATGGGGGTATAACTCATGCATGCGTTATGTGCGGGAGAAAATTTGTAACGAAGAACCATCTCAAAGTCCACACAGATACCGTGCATAAAGGTATCACCCATGCATGCGATATTTGTGGAAAGATATTCTCACAAAAGAGTAGTCGCAATGCGCACATCAAAGCCGCTCATGATGGCATAATCCACGCATGTGACGTATGTGGGAAGAAATTCTCATCAGCAAGCtctctcaaaattcacattgaTTCTCAGCACAATGGTAGCAGATATACATGCGACATATGTAAAAAGACTTACACACAAAAAAGTTATCTCAAAGTCCACATCGACTCAATGCATAATGATATCACACATACATGCGATGTatgcgggaagaaatttggaaaccGAAGTAATCTCAATCGGCATGTAAAAGCGTCGCATATTGGTGTTACTTAA
Protein Sequence
MEPRGIFNFSARVKIEPKDVLLNENDFQMIEEAPDTKNFQFLECLQKNSVRMLRECDEMQIELECKDMKPDENFLAVKKIENCSPNHLQNIKLSDNYANHDTIKREKASRKKTELDLNANFALTQKRHLIAHVDVAHITHACDICKKNFTSKSNLKRHIDSIHNGIRHTCDTCGKQFKDKYILKIHVDSTHNSISHACDICRKTFTQKGYLKIHINVAHNGVTSTCNICGKKFSGSSYLKIHISAIHRGITHPCVTCGKTFNHKTSLKNHIKTHGGITHACVMCGRKFVTKNHLKVHTDTVHKGITHACDICGKIFSQKSSRNAHIKAAHDGIIHACDVCGKKFSSASSLKIHIDSQHNGSRYTCDICKKTYTQKSYLKVHIDSMHNDITHTCDVCGKKFGNRSNLNRHVKASHIGVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01482897;
90% Identity
iTF_01482897;
80% Identity
iTF_01482897;