Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0012 0.24 12.2 4.4 14 43 140 166 124 167 0.88

2 7 0.036 7.1 7.5 1.4 19 44 173 195 171 195 0.93

3 7 0.94 1.8e+02 3.0 0.7 19 43 201 222 198 223 0.79

4 7 3.3 6.5e+02 1.2 4.6 15 29 225 239 210 255 0.74

5 7 1.9e-05 0.0038 18.0 1.7 18 44 256 279 248 279 0.94

6 7 0.41 80 4.1 0.3 19 29 285 295 283 310 0.82

7 7 0.093 18 6.2 1.0 14 27 308 321 300 328 0.85

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0012	0.24	12.2	4.4	14	43	140	166	124	167	0.88
2	7	0.036	7.1	7.5	1.4	19	44	173	195	171	195	0.93
3	7	0.94	1.8e+02	3.0	0.7	19	43	201	222	198	223	0.79
4	7	3.3	6.5e+02	1.2	4.6	15	29	225	239	210	255	0.74
5	7	1.9e-05	0.0038	18.0	1.7	18	44	256	279	248	279	0.94
6	7	0.41	80	4.1	0.3	19	29	285	295	283	310	0.82
7	7	0.093	18	6.2	1.0	14	27	308	321	300	328	0.85

Coding Sequence: ATGGACAAGAAACCTGATCTTAAAGACCTCCAACTCTTACCATGCCCCGGAGAAAATTCTACTAACCGCCTTCGACAATATGATGTAAATCATGAAACTGAACTTGAAGACGAAGTGGAAATAGTTTGTGAATGTGAAGACGTCAAGCCCAATATCCATTTATTagcagttaaaaaaattgacgttgATACTCAAGATCGCTTGCAGATTGCAAAAAATAGCAATTTTCGAAAAgttaaaaacataattaaaatagatcCCGCGGAAGAAGTGAAACAAGAATTTGTTGGTGACGGTGCCAGAGAATTGAGTTTCAATTTCAACTGTAAACTTGTCGAACAAAATAGTCAAAGAAGAactcaaaaaaagtttaaccACGAACATAACCTAGAAACTCACATCGATAcagtgtataataataaatccaGCACATGTGAAATGTGCGGTAAGAAATTTTCACATACGAGTAGTCTAATTAGGCATGTCAGAATATCACATAATTACATCACCCCCGCATGTCACATGTGCGGTAAGAAATTAACAGAAAAAAGCCATCTTAAAGATCACATCGATTCGGTCCATAATGGTATCACGCATAATTGTGATCTATGCGGAAGAAAATTATCAGTGAAAAGGTATCTCAAGATCCATATTGATAAGATGCATAATGGTGTCAAATATGTATGTGATACATGCGGCAAGAAATTTtcacacaaaaaatttatcaaaatccaCATTGATGCGATGCATAATGGTGTCAGCCACGTATGTGAAatatgtggaaaaaaatttacaagtaagagtaatctcaaaactcacatcgaATCAGTCCACAATGGTGTCACTCATGCATGCGATATATGCGGAAAGAAGTTCACACAGAGGAGTCATCTCAACGTCCACATAGATGTGATTTATAACGGTACCAAACATACATGCAATATTTGCGAAAAAGGTCTCAAACATGCATTTGATATTTTAGGAAATAAATTCTTACGTAAGATGAATCTTAGAGCTTCAGATCACATTTATGTGGCGCCTCACTCAAGCATTATAACTTAA
Protein Sequence: MDKKPDLKDLQLLPCPGENSTNRLRQYDVNHETELEDEVEIVCECEDVKPNIHLLAVKKIDVDTQDRLQIAKNSNFRKVKNIIKIDPAEEVKQEFVGDGARELSFNFNCKLVEQNSQRRTQKKFNHEHNLETHIDTVYNNKSSTCEMCGKKFSHTSSLIRHVRISHNYITPACHMCGKKLTEKSHLKDHIDSVHNGITHNCDLCGRKLSVKRYLKIHIDKMHNGVKYVCDTCGKKFSHKKFIKIHIDAMHNGVSHVCEICGKKFTSKSNLKTHIESVHNGVTHACDICGKKFTQRSHLNVHIDVIYNGTKHTCNICEKGLKHAFDILGNKFLRKMNLRASDHIYVAPHSSIIT

Sequence clustering based on sequence similarity using MMseqs2