Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.4 8.6e+02 0.8 2.6 14 25 148 159 140 166 0.81

2 7 0.0011 0.22 12.3 1.8 16 43 166 190 160 191 0.91

3 7 0.13 26 5.7 1.1 17 43 196 219 192 220 0.88

4 7 0.00077 0.15 12.9 4.8 3 43 211 248 209 249 0.91

5 7 0.0011 0.22 12.4 1.1 17 43 254 277 249 278 0.91

6 7 0.0008 0.16 12.8 0.5 17 43 283 306 279 307 0.91

7 7 0.091 18 6.2 1.6 17 42 312 334 308 336 0.70

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.4	8.6e+02	0.8	2.6	14	25	148	159	140	166	0.81
2	7	0.0011	0.22	12.3	1.8	16	43	166	190	160	191	0.91
3	7	0.13	26	5.7	1.1	17	43	196	219	192	220	0.88
4	7	0.00077	0.15	12.9	4.8	3	43	211	248	209	249	0.91
5	7	0.0011	0.22	12.4	1.1	17	43	254	277	249	278	0.91
6	7	0.0008	0.16	12.8	0.5	17	43	283	306	279	307	0.91
7	7	0.091	18	6.2	1.6	17	42	312	334	308	336	0.70

Coding Sequence: ATGGAAAACCAAGAGGACACAGTTGGAGTGAAACATGAGCCAGACGATATTTGTCCAAAAGCAGGTAATGAGTGCAATTATGATATGGTGGGCTCTTGCGAAGCAAAAAACATCAATACAATGAAGTTTCATAAATCATTAGTAAATAACATGAATGCGCCTATTCCGTTAcaggaaaaattaaatgagaaaatatttattgattttgagtgcaaaaatgttaaaaccGAACTGATCAACACCTGCAAAACCGAGGATCAAAGTTATCCGCCAATTGTGaaagtagaaaataaaattcagacAAATTACTTGAACGATAAAGAtcttattttcataaaaaaagaattcgatTACGATAATAAATGCCAATTtgaaatttgtcataaatcatttggacataAACGTAACCTCAAAGTTCATGTAAATACAGAACATGATCGGAGCAAACCTTACGAATGTGGCATATGTCACAAATCAGTACATGATCGCATCAAatccttcgaatgtgatatttgtcacaaatcatttggatacaagtataacctcaaaaagcACATAAGatcagtacatgatcgtagcaaaccctttgagtgtgatatttgtcacaaatcatttggattcaAGAGTTacctcaaaaaacacataacaactgtacatgatcgtagcaagccctttgaatgtgaaatttgtcacaaatcatttgcatACAAGAATGTCCTCAAAAAGCACATAAGatcagtacatgatcgtagcaaacccttcgagtgtgatatttgtcacaaatcatttggatacaagtataacctcaaaaagcACATAAGatcagtacatgatcgtagcaaacccttcgagtgtgatatttgtcacaaatcatttggatacaagtataacctcaaaaagcACATAAGatcagtacatgatcgtagcaaacccttcgagtgtgagatttgtcacaagtcATATGGCCGCAAAAATTACATCAAAGTTCACATAAATAAAGTACACAATGAGAGCAAATAG
Protein Sequence: MENQEDTVGVKHEPDDICPKAGNECNYDMVGSCEAKNINTMKFHKSLVNNMNAPIPLQEKLNEKIFIDFECKNVKTELINTCKTEDQSYPPIVKVENKIQTNYLNDKDLIFIKKEFDYDNKCQFEICHKSFGHKRNLKVHVNTEHDRSKPYECGICHKSVHDRIKSFECDICHKSFGYKYNLKKHIRSVHDRSKPFECDICHKSFGFKSYLKKHITTVHDRSKPFECEICHKSFAYKNVLKKHIRSVHDRSKPFECDICHKSFGYKYNLKKHIRSVHDRSKPFECDICHKSFGYKYNLKKHIRSVHDRSKPFECEICHKSYGRKNYIKVHINKVHNESK

Sequence clustering based on sequence similarity using MMseqs2