Tden003143.2
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000005.1:2299590-2301494[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.067 13 6.7 1.7 18 44 275 298 272 298 0.91 2 10 0.12 23 5.9 3.0 2 33 288 326 287 330 0.79 3 10 0.21 42 5.1 0.1 18 44 333 356 328 356 0.91 4 10 0.00013 0.025 15.4 2.8 2 43 375 413 374 417 0.94 5 10 0.00033 0.065 14.0 2.5 1 44 403 443 403 443 0.96 6 10 1.9 3.7e+02 2.0 1.2 17 29 448 460 444 472 0.75 7 10 1.8 3.6e+02 2.0 2.8 15 43 475 500 462 504 0.70 8 10 0.0014 0.27 12.0 3.3 4 43 493 529 490 530 0.90 9 10 2.3 4.6e+02 1.7 2.3 18 41 536 561 532 562 0.74 10 10 0.012 2.3 9.1 4.5 3 43 550 587 548 588 0.92
Sequence Information
- Coding Sequence
- ATGGAGAACAGAAAGGACTCAGTTagTATTAAAGAGGAACCGTTTGATGACTGGTCAGGTGTAGGCGACAAATATGACAATCAAGTGGACTCGTGCAAAGCCGAAAACTTTGAAGATCAATTAACGATAAATGAATCATCGGCCATTGACATGAATGAGTCTATGCCGTTACAGGAGGAGTTAGACGGGATTATTTCGGGGAATTTCGATAGCAAAGATGTAAAATCTGAACTTGAATGTACATCTACATTCATCTGCAAAACTGAGTATCAAAGTTATCAACCTATTGTGAAATTAGAAAACGAAACTCAGATCCATAATGACGAGTTATACATCAATTTTCagtgcaaaaatgttaaaattgaacTGTCATCTCTTTCACCTACCATCTGCAAAACTGAGACACAAAGTTGTCAACCTATTGTGAAATTAGAAAACGAAACTCAGATCCATAATGACGAGTTATACATCAATTTTCagtgcaaaaatgttaaaattgaacTGTCATCTCTTTCACCTACCATCTGCAAAACTGAGACACAAAGTTGTCAACCTATTGTGAAATTAGAAAACGAAACTCAGATCCATAATGACGAGTTATACATCAATTTTGAGTGCAGGGATGTTAAAATTGAACTAAAGCCCTCATTGATAAACATCAGTCCATCTACTGTGAAAGCAGAAAGTCAAAATCAAACAAAtcacttgaatgaaaaaaggttgataattttaataaaaaaaggattcaaTTACGATAATAACTGTCAATTAATCAGAGCAAAAGTGAATGTCAAATCTACACACAATAGCATTGGACCATTTGAATGTAAAGTTTGCAACAGGTCATTTGCAAACAAACAAAACTTAAAAAGTCACATAAATGCAATACATAAAcgaagcaaaccctttgaatgtgatatttgtcacaaattatttggataTCAGAATGTACTCAAAAGTCATAGGGTAACAACTCATAATCTTGGAAATCCctatgaatgtgatatttgtgacaaattatttggacaaaaaagtaccctcaaaactcacattgaTACAGTGCATAATCAGAGCAAACCGTTTGAATGTGATAGTtgttacaaatcatttggacaaaaaagtgaCCTTAAATCTCACATAAGTATTGTACATCTTCGGAGCAAACcgtttgaatgtgatatttgtcacaaatcatttggaaaaaaaagtaaccttAAATCTCACATAAGTACAGTACATCttcggagcaaaccctttgaatgtgatatttgtcacaaatcatttggacaaaaaagtaccctcaaaactcacattgaTACAGTGCATAATCAgagcaaaccttttgaatgtaacatatgtcaaaaatcatttggagaaaaggGTCATTTCAATAGGCACGTGAATGTAGTACACAAGCtgagcaaaccctttgaatgtgatatttgtcaaaaatcatttggacgaaaagaacacctcaaaactcacattgaTACATTACATCttcggagcaaaccctttgaatgtgaaatatgtcacaaatcatttggactaaaaAGTAACCTCACAGCTCACATAAGGACAGTACATGATGGTAACAAACCCTtcaaatgtgatatttgtcacaaatcatttggacagaAACCACACCTCAAATCTCACATAAGTATAGTACATCttcggagcaaaccctttgaatgtgaaatatgtcacaaattatttggataCAAACATGGACTCGTACACCACATAATGACGATACATAATGAAAGCCAACCTTAG
- Protein Sequence
- MENRKDSVSIKEEPFDDWSGVGDKYDNQVDSCKAENFEDQLTINESSAIDMNESMPLQEELDGIISGNFDSKDVKSELECTSTFICKTEYQSYQPIVKLENETQIHNDELYINFQCKNVKIELSSLSPTICKTETQSCQPIVKLENETQIHNDELYINFQCKNVKIELSSLSPTICKTETQSCQPIVKLENETQIHNDELYINFECRDVKIELKPSLINISPSTVKAESQNQTNHLNEKRLIILIKKGFNYDNNCQLIRAKVNVKSTHNSIGPFECKVCNRSFANKQNLKSHINAIHKRSKPFECDICHKLFGYQNVLKSHRVTTHNLGNPYECDICDKLFGQKSTLKTHIDTVHNQSKPFECDSCYKSFGQKSDLKSHISIVHLRSKPFECDICHKSFGKKSNLKSHISTVHLRSKPFECDICHKSFGQKSTLKTHIDTVHNQSKPFECNICQKSFGEKGHFNRHVNVVHKLSKPFECDICQKSFGRKEHLKTHIDTLHLRSKPFECEICHKSFGLKSNLTAHIRTVHDGNKPFKCDICHKSFGQKPHLKSHISIVHLRSKPFECEICHKLFGYKHGLVHHIMTIHNESQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482881;
- 90% Identity
- iTF_01482881;
- 80% Identity
- iTF_01482881;