Tden017977.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000085.1:756203-758259[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 5.4 1.1e+03 0.5 0.9 33 44 150 161 143 161 0.82 2 12 0.31 60 4.5 1.3 19 43 167 188 163 189 0.89 3 12 0.18 36 5.3 0.4 19 43 195 216 192 217 0.83 4 12 0.28 55 4.7 0.9 19 43 223 244 220 245 0.82 5 12 0.068 13 6.6 0.6 18 43 250 272 247 273 0.91 6 12 0.0022 0.44 11.4 1.1 19 44 279 301 276 301 0.94 7 12 0.0025 0.49 11.2 0.2 19 44 307 329 304 329 0.94 8 12 0.0025 0.49 11.2 0.2 19 44 335 357 332 357 0.94 9 12 2.3 4.6e+02 1.7 0.4 19 43 363 384 360 386 0.76 10 12 0.031 6.1 7.7 4.1 17 44 389 413 370 413 0.74 11 12 0.11 22 5.9 3.5 19 44 419 441 417 441 0.90 12 12 0.044 8.7 7.2 0.3 18 44 446 469 442 469 0.90
Sequence Information
- Coding Sequence
- ATGGAATCGAGTGATATATTTAATCCTGATAttagaGTCAAAGAAGAGTCCCGTGATGAGCCTctcaataataatgatgattataaaataattgactCAACACCCGTTagtcaaaattttaaacacgAGATGTTTTGGCAAGAAAATTCAacccaAGAGCTTCAAGAATGTGacgaaaatcatgaaaatgaatttgacgACCTGGAAATCGAAATGGAATGTACAGACATGAAGCCCAATTTATTGGCAGTTGCGAAGATTGAAGATTATTCTCCAAATCAATGGCAGGATAGCGAGGAGTACAAAACtggaaacaaaattaaattagaaatTGTCGGGACAGTGAAGAAAGAAATGTTAAGCGAAGAAGAAACTGATTTGAATTTCGGACATGGACTCAGCGAACAAAATAAACAAGGAACTGTTTCCAAAGAGCTTAACTATGAACATAGGCTAAAAACTCACATTAATACTACGCATAATGGAATCagacatgcatgtgatatttgcggaaaatcATTCAGATATAAGAGTCTTCTCCAAAGACACATCGATTCGTTACATCGTAAAATTACGCATCCATGcgatatatgccaaaagacattctcagTCAAGAGTACTGTCAAAATACATATCGAATCGGAGCATAATGGTGTCAGGCATGCATGcgatatatgccaaaagacGTTCACACAAAAAGGTAGTCTCAAAATACATATCGAATCGGTGCATAATGGTGCCAGTTATGCATGCgatatttgcaaaaatgattttaaacgaAGAGTGGGTCTCAATAGACATATCGATTCAATGCATCATAAAATAAggcatgcatgtgatatatgccaGAAGACATTTTCAGAGAAGAGTACTCTCAAAAagcacatcgattcggtgcatcgTAAAATTACGAATCCTTGTAATAAATGCCCAAAGACATTTTCAGACAAGAGTACTCTCAAAAagcacatcgattcggtgcatcgTAAAATTACGAATCCTTGTAATAAATGCCCAAAGACATTTTCAGACAAGAGTACTCTCAAAAagcacatcgattcggtgcatcgTAAAATAAGGTATGGATGTGATTTATGTGGAAAATCATTCAGATATAAGAGTTATATCCAAAGACACATCGATTCGTTACATCGTAAAATTAcgcatgcatgtgatatatgccaaaagacattctcagACAAGAATCATCTCAAAAGGCATATGGATGCGATGCATAATGGAATCACCCACGCATGTGAtttctgcgaaaaaaaatataaatatcaaactCATCTCAATAAACATGTCAAATCCTCGCACAGTAGTATCGTATATTCATGCAAGACATGCGGAAagacatttggacaaaaaagaaatctcAGAGCTCACATCGATGTGGCGCATCGCTCACTCAATATGAcctaa
- Protein Sequence
- MESSDIFNPDIRVKEESRDEPLNNNDDYKIIDSTPVSQNFKHEMFWQENSTQELQECDENHENEFDDLEIEMECTDMKPNLLAVAKIEDYSPNQWQDSEEYKTGNKIKLEIVGTVKKEMLSEEETDLNFGHGLSEQNKQGTVSKELNYEHRLKTHINTTHNGIRHACDICGKSFRYKSLLQRHIDSLHRKITHPCDICQKTFSVKSTVKIHIESEHNGVRHACDICQKTFTQKGSLKIHIESVHNGASYACDICKNDFKRRVGLNRHIDSMHHKIRHACDICQKTFSEKSTLKKHIDSVHRKITNPCNKCPKTFSDKSTLKKHIDSVHRKITNPCNKCPKTFSDKSTLKKHIDSVHRKIRYGCDLCGKSFRYKSYIQRHIDSLHRKITHACDICQKTFSDKNHLKRHMDAMHNGITHACDFCEKKYKYQTHLNKHVKSSHSSIVYSCKTCGKTFGQKRNLRAHIDVAHRSLNMT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482880;
- 90% Identity
- iTF_01482880;
- 80% Identity
- iTF_01482880;