Tden000539.1
Basic Information
- Insect
- Trichogramma dendrolimi
- Gene Symbol
- -
- Assembly
- GCA_034770305.1
- Location
- JAPMIB010000001.1:6301864-6303402[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.048 9.4 7.1 1.0 14 43 167 193 162 194 0.75 2 10 0.045 8.8 7.2 0.8 18 43 199 221 196 222 0.80 3 10 0.17 33 5.4 2.4 17 43 226 249 210 250 0.76 4 10 0.039 7.6 7.4 4.1 18 33 255 272 253 278 0.76 5 10 0.0033 0.66 10.8 0.6 18 39 283 301 280 306 0.89 6 10 0.52 1e+02 3.8 5.9 19 44 312 334 307 334 0.91 7 10 0.9 1.8e+02 3.0 2.7 19 43 340 361 336 362 0.84 8 10 0.00038 0.076 13.8 1.5 19 43 368 389 365 390 0.90 9 10 0.28 56 4.6 1.0 19 38 396 422 393 423 0.78 10 10 0.0029 0.56 11.0 2.1 19 44 424 446 422 446 0.95
Sequence Information
- Coding Sequence
- ATGGAATCGAGTGATTTCTTCGACTGTGCTGTCAGAGTGAAAGAGGAGCCTAGTGATACATCGTTCGTGGAAAATAATCGTGATATGATTGATGAAAAACCAGATCTTAAAAACGTTCAATTCTTGACATTTCCACAAAAACATTTGaTCCATACTCTTCGAAAATGTGacattaaatttgaaagtGAATATAACGAAGAAGTGGAAATAGTTGTAGAATGCGAAGACGTCAAGCCCTGTAGGGATTTGTTagcagttaaaaaaattgaagatgatTTTCCAAATCACTTGCGGAATCTAAGAGATAGTGATGGTTATGAAACtcgcaacaaaattaaaatagaaaacgcTGGCGAGGTGGAGCAGGAATATTTTGGTTATGCCGCAGAAGAAACGAATGTTAATACTAAAGTTAtggaacaaaataaaaaaagaaaacttacaaaaaaatttaataacaaacgtaacctcaaaacacaaATTGGTACTTCTTATAATGATACAACCCACACATGCGATGTGTGTAAAAAGACGTTTAAACGAAAGAATGATCTGAATATCCACGTTCAATCAGTTCATAATGGAATCACTTACACGTGTGATATATGCGGCAAGACATTTTCAACGAAGCATTATCTCAAAGCTCACATCGATATAGTGCATAGAGGTGTCACACATatatgtgatatttgcggaaagaaattttcaacgaagaaGTATCTCAAGGACCACATTGATGTAGCGCACATGGGTGTCACATATACATGTAATAAATGTGGGAAGACTTTTAATCGGAAGTGTTATCTGAATACCCACGTTCAATCAGTTCATAATGGAATCACTTACACGTGTGATATATGCGGCAAGACATTTTCAATGAAGAAGAATCTCAAAGCCCACATTGGTGCGTTGCACATGGGTGTGACACATGCATGTcataaatgtgaaaagaaattctcaacaaagggtcatctcaaaactcacatcaaTTCAAAGCACAATGGTTTCGCTCATGCATGTGgtatttgcggaaagaaatgTTCAACAAAGGATTATCTCAAGGTCCACATCAATGCGAAGCATAATGGTATAACACATGCATgtaatatttgcggaaagacattttcGCAAAGaagtaatctcaaaactcacatcgatATAGTGCACAACGGTGTCAGACATCCGTGTGATACATGTAAAAAGACGTTTAAACGAAAGATTGATCTGAATAACCACGTTCAATCGGTTCATAATGGAATTACTCACAtgtgtgatatttgcggaaagaaagTTTCAACGAAAAAGTGTCTCAAGGTCCACATCAATACCGTGCACAGTTGTATTTCACGCAGATGTGATCCACGTGGAAAGGCATTCCTTATTCACAAATGA
- Protein Sequence
- MESSDFFDCAVRVKEEPSDTSFVENNRDMIDEKPDLKNVQFLTFPQKHLIHTLRKCDIKFESEYNEEVEIVVECEDVKPCRDLLAVKKIEDDFPNHLRNLRDSDGYETRNKIKIENAGEVEQEYFGYAAEETNVNTKVMEQNKKRKLTKKFNNKRNLKTQIGTSYNDTTHTCDVCKKTFKRKNDLNIHVQSVHNGITYTCDICGKTFSTKHYLKAHIDIVHRGVTHICDICGKKFSTKKYLKDHIDVAHMGVTYTCNKCGKTFNRKCYLNTHVQSVHNGITYTCDICGKTFSMKKNLKAHIGALHMGVTHACHKCEKKFSTKGHLKTHINSKHNGFAHACGICGKKCSTKDYLKVHINAKHNGITHACNICGKTFSQRSNLKTHIDIVHNGVRHPCDTCKKTFKRKIDLNNHVQSVHNGITHMCDICGKKVSTKKCLKVHINTVHSCISRRCDPRGKAFLIHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01482896;
- 90% Identity
- iTF_01482896;
- 80% Identity
- iTF_01482896;