Basic Information

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1e-05 0.002 18.9 3.8 12 44 154 183 146 183 0.89

2 5 0.032 6.3 7.7 2.1 19 44 189 211 185 211 0.93

3 5 0.0016 0.32 11.8 0.3 18 44 216 239 213 239 0.94

4 5 0.031 6.2 7.7 2.3 19 43 245 266 242 267 0.90

5 5 5.8 1.1e+03 0.5 5.1 9 43 261 292 256 293 0.77

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1e-05	0.002	18.9	3.8	12	44	154	183	146	183	0.89
2	5	0.032	6.3	7.7	2.1	19	44	189	211	185	211	0.93
3	5	0.0016	0.32	11.8	0.3	18	44	216	239	213	239	0.94
4	5	0.031	6.2	7.7	2.3	19	43	245	266	242	267	0.90
5	5	5.8	1.1e+03	0.5	5.1	9	43	261	292	256	293	0.77

Coding Sequence: ATGGAATTCAGTGGTGTATATAACTGTAATATCAGAGTGAAGGAGGAACCAAATGATGTTTTCGCAACTGAAAATGAAGATTATAAGATAATTGACAAtgcacgcgatgctaaaaccGACGAATTCTCGAGTTTTTGTCGAGAAAATTTAACCCATGGGCTTCGAGAATGTGATGAAAATTCCGGACCTAATGACGATTTGGAAATAGAATTCGAAAGTAAGGACGAGAAGCTCGGAATTAACTTATTAGTAGTCAAAAAGATCGAGGACGATTATCCAGATCATTTGCAGCATATGCAAAATAGTTGCGATTATCAGactcaaaagaaaattaaagaagaaattgTCGACGAAGTAAAAGAGGAATTGAATTTGGATGGTGAACTCAGTGATGCATTtgatgcaaatgaaaaaacattggCTCAAAATAGTCTATGCAAAACCCAAACTGATAAGGCACGCAATCGTACCAAATATTCATGTAATATATgcggtaaaaaattttcacgaaaaaataatctcaagGTCCACATCGAAGCAGTACATAATGGTGTTAAGCATCCGTGTAGTATATGtaaaaagacattcacacaaaaagctaatctcaaaattcacatcaaTGCGATGCATAATGATATGGCACCTACTTGCGAAATGTGTGGAAAGAAATTCGCATATAAGAGTagtctcaaaatccacatggATTCAATGCATAATAAGATAACTCACCCATGTAATACGTGTGGCAAGACATTTTCGCAAAAGTATCATCTTATATCTCACATTAAAATGCAGCACGAAGGCATCGCATGCGCTGTTTgcggagaaaaatttaaacatagGAAATATCTATACAGACACGTACAAATTGTGCATGAGGGCAATACTCAAGCACGAGATCAATGCAAAAGATCTTAA
Protein Sequence: MEFSGVYNCNIRVKEEPNDVFATENEDYKIIDNARDAKTDEFSSFCRENLTHGLRECDENSGPNDDLEIEFESKDEKLGINLLVVKKIEDDYPDHLQHMQNSCDYQTQKKIKEEIVDEVKEELNLDGELSDAFDANEKTLAQNSLCKTQTDKARNRTKYSCNICGKKFSRKNNLKVHIEAVHNGVKHPCSICKKTFTQKANLKIHINAMHNDMAPTCEMCGKKFAYKSSLKIHMDSMHNKITHPCNTCGKTFSQKYHLISHIKMQHEGIACAVCGEKFKHRKYLYRHVQIVHEGNTQARDQCKRS

Sequence clustering based on sequence similarity using MMseqs2